Variant report

Variant	rs11631228
Chromosome Location	chr15:57256390-57256391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57254284..57256820-chr15:57279086..57281932,2	K562	blood:
2	chr15:57254985..57258076-chr15:57265765..57268821,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11071305	0.82[EUR][1000 genomes]
rs11630195	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11631541	0.90[AMR][1000 genomes]
rs11631732	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11632592	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11853331	0.81[AMR][1000 genomes]
rs11858471	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12898327	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12898844	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12899187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12899915	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12900986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901780	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12904070	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12904784	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12905900	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12906873	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12906936	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12908670	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12909811	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12910094	0.84[AMR][1000 genomes]
rs12914182	0.83[AMR][1000 genomes]
rs12914410	0.82[AMR][1000 genomes]
rs12914625	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12916237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12917247	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1430823	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628067	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17239040	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17819700	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2053472	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2111891	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2116065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213164	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2165461	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2414490	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2414494	0.83[AMR][1000 genomes]
rs2583108	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2585082	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2585087	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2585102	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733171	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2733174	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733176	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733181	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2962993	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34262415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35646942	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3803454	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3803455	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4399497	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4774898	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4774899	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4774902	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62022986	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62022988	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62025331	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs715338	0.89[ASN][1000 genomes]
rs7170133	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7496293	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:57244200-57257800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:57251000-57259200	Weak transcription	Right Atrium	heart
5	chr15:57251000-57260600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:57251000-57261000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:57251800-57260800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:57253400-57256800	Enhancers	Dnd41	blood
9	chr15:57253800-57259000	Enhancers	A549	lung
10	chr15:57254200-57258000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:57254400-57256400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr15:57254400-57256600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:57254400-57256800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:57254400-57256800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr15:57254400-57256800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:57254400-57256800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:57254400-57257000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr15:57254400-57257000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr15:57254400-57257000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr15:57254400-57259000	Enhancers	Brain Substantia Nigra	brain
21	chr15:57254400-57259000	Enhancers	HepG2	liver
22	chr15:57254600-57256400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr15:57254600-57256800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:57254600-57256800	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr15:57254600-57256800	Enhancers	Brain Angular Gyrus	brain
26	chr15:57254600-57258000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:57254600-57258200	Enhancers	NHDF-Ad	bronchial
28	chr15:57254800-57256800	Enhancers	Brain Cingulate Gyrus	brain
29	chr15:57254800-57257800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:57254800-57259000	Enhancers	Brain Hippocampus Middle	brain
31	chr15:57255000-57257000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:57255000-57257200	Enhancers	Fetal Lung	lung
33	chr15:57255000-57259000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:57255000-57259800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:57255200-57257200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:57255200-57257400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:57255400-57256800	Enhancers	Colon Smooth Muscle	Colon
38	chr15:57255400-57256800	Enhancers	Fetal Thymus	thymus
39	chr15:57255400-57256800	Enhancers	Thymus	Thymus
40	chr15:57255400-57257000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr15:57255400-57257000	Enhancers	Brain Anterior Caudate	brain
42	chr15:57255400-57257200	Enhancers	Fetal Heart	heart
43	chr15:57255400-57257400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:57255400-57257800	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr15:57255600-57256400	Enhancers	Brain Germinal Matrix	brain
46	chr15:57255600-57256600	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr15:57255600-57256800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr15:57255600-57256800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr15:57255600-57256800	Enhancers	Liver	Liver
50	chr15:57255600-57256800	Enhancers	Brain Inferior Temporal Lobe	brain

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