Variant report

Variant	rs62025331
Chromosome Location	chr15:57231034-57231035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57227613..57229628-chr15:57229814..57231520,2	K562	blood:
2	chr15:57210017..57214406-chr15:57230340..57233852,4	K562	blood:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11630195	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631228	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11631541	0.85[AMR][1000 genomes]
rs11631732	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632592	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11858471	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12898327	0.89[AMR][1000 genomes]
rs12899187	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12899915	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12900986	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12901780	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12904070	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12904784	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12905900	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12906873	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12906936	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12908670	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12909811	0.91[AMR][1000 genomes]
rs12914625	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12916237	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12916958	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12917247	0.89[AMR][1000 genomes]
rs1430823	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1628067	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17239040	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17819700	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2053472	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2111891	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116065	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2116066	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213164	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2165461	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2414490	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2583108	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2585082	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2585087	0.88[AMR][1000 genomes]
rs2585102	0.83[AMR][1000 genomes]
rs2733171	0.88[AMR][1000 genomes]
rs2733174	0.83[AMR][1000 genomes]
rs2733176	0.86[AMR][1000 genomes]
rs2733181	0.82[AMR][1000 genomes]
rs2962993	0.84[AMR][1000 genomes]
rs34262415	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35646942	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3803454	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3803455	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4399497	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4774898	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774899	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4774902	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62022986	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62022988	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs715338	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170133	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7496293	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
3	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:57216400-57241800	Weak transcription	Fetal Brain Male	brain
6	chr15:57220400-57236400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:57222400-57231200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:57222600-57231200	Weak transcription	Osteobl	bone
9	chr15:57222600-57231800	Weak transcription	HSMM	muscle
10	chr15:57222600-57233000	Weak transcription	Right Ventricle	heart
11	chr15:57222600-57250200	Weak transcription	NH-A	brain
12	chr15:57222800-57231800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:57222800-57232600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:57222800-57240800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:57222800-57255000	Weak transcription	HMEC	breast
16	chr15:57223000-57236800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:57223200-57240400	Weak transcription	Aorta	Aorta
18	chr15:57224400-57231200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:57224400-57231600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:57224400-57231800	Weak transcription	Adipose Nuclei	Adipose
21	chr15:57224400-57231800	Weak transcription	Right Atrium	heart
22	chr15:57224400-57234400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:57224400-57235200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr15:57224400-57238000	Weak transcription	Fetal Lung	lung
25	chr15:57224600-57233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:57224600-57248600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:57225000-57231200	Weak transcription	Small Intestine	intestine
28	chr15:57225000-57239400	Weak transcription	Left Ventricle	heart
29	chr15:57225000-57244200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:57225000-57249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:57225200-57238000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:57226400-57234000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:57226400-57235200	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:57226400-57242000	Weak transcription	HUVEC	blood vessel
35	chr15:57226600-57234600	Weak transcription	Fetal Heart	heart
36	chr15:57226800-57231200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr15:57226800-57231400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:57227000-57233000	Weak transcription	HSMMtube	muscle
39	chr15:57227000-57249800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr15:57227200-57231200	Weak transcription	Brain Substantia Nigra	brain
41	chr15:57227200-57231800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr15:57227200-57234200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr15:57227200-57236800	Weak transcription	A549	lung
44	chr15:57227400-57231800	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:57227600-57234000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:57227600-57234000	Weak transcription	Brain Germinal Matrix	brain
47	chr15:57227600-57235400	Weak transcription	Dnd41	blood
48	chr15:57227600-57236000	Weak transcription	Psoas Muscle	Psoas
49	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:57227800-57235200	Weak transcription	NHEK	skin

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