Variant report

Variant	rs11631732
Chromosome Location	chr15:57214101-57214102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57213938..57216093-chr15:57393779..57396458,2	MCF-7	breast:
2	chr15:57213053..57214861-chr15:57239551..57242181,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11630195	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11631228	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11632592	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11858471	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12899187	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12899915	0.81[AMR][1000 genomes]
rs12900986	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12901780	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12904070	0.80[ASN][1000 genomes]
rs12904784	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12906873	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12906936	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12908670	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12914625	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12916237	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12916958	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17239040	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17819700	0.84[ASN][1000 genomes]
rs2053472	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2111891	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2116065	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2116066	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs213164	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2165461	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2414490	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2583108	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2585082	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34262415	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35646942	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3803454	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3803455	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4399497	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4774898	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4774899	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4774902	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62022986	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62025331	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs715338	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170133	0.80[ASN][1000 genomes]
rs7496293	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57209400-57217200	Active TSS	Thymus	Thymus
2	chr15:57210400-57215600	Active TSS	Fetal Thymus	thymus
3	chr15:57211400-57216000	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr15:57212400-57218200	Weak transcription	Small Intestine	intestine
5	chr15:57212400-57219000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:57212400-57222000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:57212400-57224800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:57212400-57224800	Weak transcription	Spleen	Spleen
9	chr15:57212400-57230400	Weak transcription	Lung	lung
10	chr15:57212400-57233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
12	chr15:57212600-57214800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:57212600-57214800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:57212600-57215400	Weak transcription	Colonic Mucosa	Colon
15	chr15:57212600-57215600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:57212600-57218200	Weak transcription	Aorta	Aorta
17	chr15:57212600-57224000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:57212800-57214200	Weak transcription	HSMM	muscle
20	chr15:57212800-57215200	Weak transcription	Stomach Mucosa	stomach
21	chr15:57212800-57218200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:57212800-57218600	Weak transcription	Fetal Stomach	stomach
23	chr15:57212800-57219200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:57212800-57220200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:57212800-57220600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:57212800-57222200	Weak transcription	Left Ventricle	heart
27	chr15:57212800-57222200	Weak transcription	Psoas Muscle	Psoas
28	chr15:57212800-57222200	Weak transcription	Right Ventricle	heart
29	chr15:57212800-57222400	Weak transcription	Ovary	ovary
30	chr15:57212800-57224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:57212800-57227200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr15:57213000-57214200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:57213000-57214400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
34	chr15:57213000-57215200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:57213000-57215600	Weak transcription	Primary B cells from cord blood	blood
36	chr15:57213000-57216000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr15:57213000-57216800	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:57213000-57218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr15:57213000-57219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:57213000-57220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:57213000-57222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:57213000-57222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr15:57213000-57227400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:57213200-57214200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:57213200-57214200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:57213200-57214200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:57213200-57214200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:57213200-57214200	Weak transcription	Hela-S3	cervix
49	chr15:57213200-57214200	Weak transcription	HepG2	liver
50	chr15:57213200-57214400	Strong transcription	H1 Cell Line	embryonic stem cell

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