Variant report

Variant	rs62022986
Chromosome Location	chr15:57278894-57278895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57277206..57280483-chr15:57280538..57284418,3	K562	blood:
2	chr15:57277263..57280006-chr15:57281828..57283970,2	K562	blood:
3	chr15:57275197..57277151-chr15:57278136..57281602,3	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11071305	0.82[EUR][1000 genomes]
rs11630195	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11631228	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631541	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11631732	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11632592	0.80[AMR][1000 genomes]
rs11853331	0.81[AMR][1000 genomes]
rs11858471	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12898327	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12898844	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12899187	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12899915	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12900986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12901780	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12903578	0.82[AMR][1000 genomes]
rs12904070	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12904784	0.81[AMR][1000 genomes]
rs12905900	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12906873	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12906936	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12908670	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12909811	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12910094	0.84[AMR][1000 genomes]
rs12914182	0.83[AMR][1000 genomes]
rs12914410	0.82[AMR][1000 genomes]
rs12914625	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12915473	0.81[AMR][1000 genomes]
rs12916237	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12916958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12917247	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1430823	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1628067	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17239040	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17819700	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2053472	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2111891	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2116065	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2116066	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs213164	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2165461	0.81[AMR][1000 genomes]
rs2414490	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2414494	0.83[AMR][1000 genomes]
rs2583108	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2585082	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2585087	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2585102	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733171	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2733174	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733176	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733181	0.86[AMR][1000 genomes]
rs2962993	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34262415	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35646942	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3803454	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3803455	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4399497	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4774898	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4774899	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4774902	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62022988	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62025331	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7170133	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7496293	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57261200-57279000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:57262200-57280000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:57269800-57304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:57270000-57280200	Weak transcription	Fetal Brain Male	brain
5	chr15:57272200-57280600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr15:57272200-57282400	Enhancers	Primary T cells from cord blood	blood
7	chr15:57273000-57279400	Weak transcription	Pancreas	Pancrea
8	chr15:57273000-57280800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:57273000-57281400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:57273000-57281600	Weak transcription	Ovary	ovary
11	chr15:57273000-57283200	Weak transcription	Spleen	Spleen
12	chr15:57273000-57285800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:57273000-57307200	Weak transcription	Fetal Intestine Small	intestine
14	chr15:57273600-57279400	Weak transcription	Small Intestine	intestine
15	chr15:57273600-57281600	Weak transcription	K562	blood
16	chr15:57274000-57287600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:57274200-57280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:57274200-57289200	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:57274200-57295600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr15:57275000-57279000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr15:57275400-57280400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:57275400-57306200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:57276000-57279400	Weak transcription	HepG2	liver
24	chr15:57276200-57279400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr15:57276200-57282600	Enhancers	Brain Substantia Nigra	brain
26	chr15:57276200-57284000	Weak transcription	Lung	lung
27	chr15:57276200-57289200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:57276200-57313400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr15:57276400-57279600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:57276600-57279200	Weak transcription	Fetal Thymus	thymus
31	chr15:57276600-57279200	Weak transcription	Psoas Muscle	Psoas
32	chr15:57276600-57279600	Enhancers	HSMM	muscle
33	chr15:57276600-57282000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:57276600-57282200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr15:57276600-57283000	Weak transcription	Left Ventricle	heart
36	chr15:57276600-57283200	Weak transcription	Right Atrium	heart
37	chr15:57276600-57288000	Weak transcription	Aorta	Aorta
38	chr15:57276800-57280600	Enhancers	HSMMtube	muscle
39	chr15:57276800-57288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:57277000-57280600	Enhancers	GM12878-XiMat	blood
41	chr15:57277000-57281400	Enhancers	A549	lung
42	chr15:57277000-57281800	Weak transcription	Thymus	Thymus
43	chr15:57277000-57285400	Weak transcription	Fetal Intestine Large	intestine
44	chr15:57277000-57313400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:57277200-57279200	Weak transcription	Dnd41	blood
46	chr15:57277200-57279800	Weak transcription	Fetal Heart	heart
47	chr15:57277200-57280400	Weak transcription	Liver	Liver
48	chr15:57277200-57280800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr15:57277400-57279400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:57277400-57280200	Weak transcription	Colon Smooth Muscle	Colon

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