Variant report

Variant	rs7170133
Chromosome Location	chr15:57283194-57283195
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57212275..57213860-chr15:57281190..57283282,2	K562	blood:
2	chr15:57281787..57284402-chr15:57285432..57287690,2	K562	blood:
3	chr15:57277263..57280006-chr15:57281828..57283970,2	K562	blood:
4	chr15:57277206..57280483-chr15:57280538..57284418,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11071305	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11630195	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11631228	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11631732	0.80[ASN][1000 genomes]
rs11858471	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12898327	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12898844	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12899187	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12899915	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12900874	0.82[ASN][1000 genomes]
rs12900986	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12901780	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12904070	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12905900	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12906873	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12906936	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12908670	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12909811	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12912007	0.88[AMR][1000 genomes]
rs12914625	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12916237	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12916958	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12917247	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1430823	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628067	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17239040	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17819700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2053472	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2111891	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2116065	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2116066	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs213164	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2414490	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2583108	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2585082	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2585087	0.87[EUR][1000 genomes]
rs2585102	0.86[EUR][1000 genomes]
rs2733171	0.87[EUR][1000 genomes]
rs2733174	0.86[EUR][1000 genomes]
rs2733176	0.86[EUR][1000 genomes]
rs2733181	0.81[ASN][1000 genomes]
rs2962993	0.84[EUR][1000 genomes]
rs34262415	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35646942	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3803454	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4399497	0.80[EUR][1000 genomes]
rs4774898	0.81[EUR][1000 genomes]
rs4774899	0.81[AMR][1000 genomes]
rs4774902	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4774910	0.87[AMR][1000 genomes]
rs62022986	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62022988	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62025331	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493901	0.88[AMR][1000 genomes]
rs715338	0.82[ASN][1000 genomes]
rs7496293	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57269800-57304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:57273000-57283200	Weak transcription	Spleen	Spleen
3	chr15:57273000-57285800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:57273000-57307200	Weak transcription	Fetal Intestine Small	intestine
5	chr15:57274000-57287600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:57274200-57289200	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:57274200-57295600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:57275400-57306200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:57276200-57284000	Weak transcription	Lung	lung
10	chr15:57276200-57289200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:57276200-57313400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr15:57276600-57283200	Weak transcription	Right Atrium	heart
13	chr15:57276600-57288000	Weak transcription	Aorta	Aorta
14	chr15:57276800-57288600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:57277000-57285400	Weak transcription	Fetal Intestine Large	intestine
16	chr15:57277000-57313400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:57277600-57287600	Weak transcription	Brain Germinal Matrix	brain
18	chr15:57277800-57285000	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr15:57278000-57285400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:57278600-57295400	Weak transcription	NH-A	brain
21	chr15:57279400-57300000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:57279600-57301800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr15:57279800-57300200	Weak transcription	Psoas Muscle	Psoas
24	chr15:57280600-57286800	Weak transcription	Fetal Brain Male	brain
25	chr15:57280600-57294000	Weak transcription	HSMMtube	muscle
26	chr15:57281200-57287600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:57281600-57285600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:57282000-57284800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:57282000-57285000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:57282000-57285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:57282000-57285000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:57282000-57285200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:57282000-57285200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:57282000-57285400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:57282000-57285400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:57282000-57285400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:57282000-57285600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr15:57282000-57289200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr15:57282000-57289800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr15:57282000-57295400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr15:57282000-57295400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr15:57282000-57295600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:57282000-57307400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:57282000-57315000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr15:57282200-57284200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr15:57282200-57284200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr15:57282200-57285000	Weak transcription	Primary B cells from cord blood	blood
48	chr15:57282200-57285400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:57282200-57285400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:57282200-57285400	Weak transcription	Fetal Lung	lung

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