Variant report

Variant	rs12914677
Chromosome Location	chr15:74201929-74201930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74189981..74192337-chr15:74200765..74203588,2	MCF-7	breast:
2	chr15:74201015..74203312-chr15:74205773..74208210,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11636136	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12902040	1.00[CHB][hapmap]
rs2084851	0.85[CEU][hapmap]
rs4272992	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4445847	0.85[CEU][hapmap]
rs4886717	1.00[CHB][hapmap]
rs4886721	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7163502	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
2	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
4	chr15:74192200-74203400	Weak transcription	Aorta	Aorta
5	chr15:74192600-74207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:74195400-74203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:74195800-74210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:74197000-74208600	Weak transcription	Thymus	Thymus
10	chr15:74198200-74206600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:74198200-74215200	Weak transcription	Pancreas	Pancrea
12	chr15:74199200-74216200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:74199600-74203000	Weak transcription	Left Ventricle	heart
14	chr15:74199600-74204000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:74199600-74208600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:74199800-74208600	Weak transcription	NHLF	lung
17	chr15:74199800-74211200	Weak transcription	NH-A	brain
18	chr15:74199800-74211400	Weak transcription	Osteobl	bone
19	chr15:74199800-74213800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:74200000-74208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:74200000-74210200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:74200400-74205800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr15:74200400-74208600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:74200600-74202600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr15:74200600-74208600	Weak transcription	HSMM	muscle
26	chr15:74200600-74212200	Weak transcription	Fetal Heart	heart
27	chr15:74200800-74202000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:74200800-74202000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:74200800-74202600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:74200800-74203200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:74200800-74203200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:74200800-74203800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:74200800-74203800	Weak transcription	Stomach Mucosa	stomach
34	chr15:74200800-74210200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:74200800-74210400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:74200800-74210400	Weak transcription	NHDF-Ad	bronchial
37	chr15:74201000-74202200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:74201000-74202400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:74201000-74210400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr15:74201200-74211000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:74201400-74202800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:74201800-74203200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:74201800-74204400	Strong transcription	Fetal Stomach	stomach

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