Variant report

Variant	rs12917267
Chromosome Location	chr15:92603822-92603823
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12440470	0.80[ASN][1000 genomes]
rs12708590	0.80[ASN][1000 genomes]
rs2135853	0.80[ASN][1000 genomes]
rs4374150	0.80[ASN][1000 genomes]
rs908650	0.80[ASN][1000 genomes]
rs908651	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92600000-92605200	Enhancers	Fetal Heart	heart
5	chr15:92600600-92605000	Weak transcription	Aorta	Aorta
6	chr15:92600600-92605000	Weak transcription	Ovary	ovary
7	chr15:92600800-92610200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:92602800-92604800	Weak transcription	Right Atrium	heart
9	chr15:92603000-92604200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:92603000-92604200	Weak transcription	Brain Substantia Nigra	brain
11	chr15:92603000-92604800	Weak transcription	Left Ventricle	heart
12	chr15:92603000-92604800	Weak transcription	Psoas Muscle	Psoas
13	chr15:92603000-92605600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:92603200-92604400	Weak transcription	Brain Angular Gyrus	brain
15	chr15:92603200-92604400	Weak transcription	Fetal Brain Male	brain
16	chr15:92603200-92604400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:92603200-92604800	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:92603200-92604800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:92603200-92605000	Weak transcription	Spleen	Spleen
20	chr15:92603200-92610000	Weak transcription	Lung	lung
21	chr15:92603400-92604400	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:92603400-92605000	Weak transcription	Esophagus	oesophagus
23	chr15:92603400-92605200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:92603400-92605800	Weak transcription	Fetal Brain Female	brain
25	chr15:92603400-92611400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:92603800-92604200	Weak transcription	Right Ventricle	heart

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