Variant report

Variant	rs908650
Chromosome Location	chr15:92601631-92601632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92582522..92585507-chr15:92601310..92602850,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11074038	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11074040	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1158683	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12050741	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12440470	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591961	1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12708590	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917267	0.80[ASN][1000 genomes]
rs1400786	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1543166	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543167	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1568211	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2135853	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4247079	0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs4340310	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4374150	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4499213	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4530111	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4644836	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4984328	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4984329	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6496890	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167618	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7168605	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7171310	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7177406	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7181950	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030627	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8039834	0.82[EUR][1000 genomes]
rs8041844	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs908651	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs992838	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:92593800-92602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:92594200-92602200	Weak transcription	Spleen	Spleen
5	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:92597400-92601800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:92599200-92603000	Enhancers	Brain Cingulate Gyrus	brain
8	chr15:92599200-92603400	Enhancers	Brain Hippocampus Middle	brain
9	chr15:92599800-92602800	Enhancers	Right Atrium	heart
10	chr15:92599800-92603000	Enhancers	Brain Substantia Nigra	brain
11	chr15:92599800-92603200	Enhancers	Brain Angular Gyrus	brain
12	chr15:92599800-92603800	Enhancers	Right Ventricle	heart
13	chr15:92600000-92603000	Enhancers	Left Ventricle	heart
14	chr15:92600000-92603200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr15:92600000-92605200	Enhancers	Fetal Heart	heart
16	chr15:92600200-92603400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr15:92600600-92601800	Weak transcription	Psoas Muscle	Psoas
18	chr15:92600600-92602000	Weak transcription	Fetal Brain Female	brain
19	chr15:92600600-92602200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr15:92600600-92605000	Weak transcription	Aorta	Aorta
21	chr15:92600600-92605000	Weak transcription	Ovary	ovary
22	chr15:92600800-92610200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr15:92601000-92601800	Weak transcription	Pancreas	Pancrea
24	chr15:92601000-92602200	Weak transcription	Lung	lung
25	chr15:92601200-92602600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:92601200-92603200	Enhancers	Fetal Brain Male	brain
27	chr15:92601600-92602800	Bivalent Enhancer	Placenta	Placenta
28	chr15:92601600-92603200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr15:92601600-92603400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:92601600-92603400	Enhancers	Esophagus	oesophagus

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