Variant report

Variant	rs992838
Chromosome Location	chr15:92599039-92599040
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11074038	0.81[ASW][hapmap];0.89[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11074040	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1158683	0.89[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12050741	0.89[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12440470	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12591961	1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12708590	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1400786	0.89[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1543166	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1543167	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1568211	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2135853	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4247079	0.85[ASW][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.83[JPT][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap];0.85[ASN][1000 genomes]
rs4340310	0.87[ASW][hapmap];0.89[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.96[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4374150	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4499213	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4530111	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4644836	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4984328	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4984329	0.92[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6496890	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7167618	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7168605	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7171310	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177406	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7181950	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8030627	0.89[CEU][hapmap];0.92[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8038377	0.80[EUR][1000 genomes]
rs8039834	0.83[EUR][1000 genomes]
rs8041844	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs908650	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs908651	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs908655	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
2	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:92591600-92600200	Weak transcription	Ovary	ovary
4	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:92593800-92602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:92594200-92602200	Weak transcription	Spleen	Spleen
7	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:92594600-92601600	Weak transcription	Esophagus	oesophagus
9	chr15:92595400-92599800	Weak transcription	Lung	lung
10	chr15:92595400-92599800	Weak transcription	Right Ventricle	heart
11	chr15:92595600-92600000	Weak transcription	Fetal Heart	heart
12	chr15:92595600-92600000	Weak transcription	Left Ventricle	heart
13	chr15:92595800-92599800	Weak transcription	Right Atrium	heart
14	chr15:92596800-92600200	Weak transcription	Aorta	Aorta
15	chr15:92597200-92600200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:92597400-92599200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:92597400-92599800	Weak transcription	Brain Angular Gyrus	brain
18	chr15:92597400-92599800	Weak transcription	Brain Substantia Nigra	brain
19	chr15:92597400-92601800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:92597600-92600000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:92598800-92599200	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:92599000-92599600	Weak transcription	Pancreas	Pancrea

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