Variant report

Variant	rs1568211
Chromosome Location	chr15:92614736-92614737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92613588..92616911-chr15:92617353..92620743,5	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11074038	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11074040	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1158683	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12050741	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12440470	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12591961	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12708590	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1400786	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543166	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543167	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2135853	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4247079	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4340310	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4374150	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4499213	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4530111	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4644836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4984328	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4984329	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6496890	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167618	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7168605	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7171310	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7177406	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181950	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030627	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8039834	0.82[EUR][1000 genomes]
rs8041844	0.82[EUR][1000 genomes]
rs908650	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs908651	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs908655	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs992838	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92609800-92616000	Enhancers	Brain Cingulate Gyrus	brain
2	chr15:92610800-92615400	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
4	chr15:92611000-92615200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:92611200-92614800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr15:92611200-92615200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:92611800-92615200	Enhancers	Left Ventricle	heart
8	chr15:92612200-92614800	Weak transcription	Fetal Brain Female	brain
9	chr15:92612200-92616200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:92612400-92615000	Enhancers	Right Ventricle	heart
11	chr15:92612800-92617400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:92613000-92617600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:92613000-92617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:92613000-92620600	Weak transcription	Pancreas	Pancrea
15	chr15:92613200-92617600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr15:92613400-92616200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:92613400-92616400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:92613400-92616400	Weak transcription	Small Intestine	intestine
19	chr15:92613400-92616600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:92613400-92616800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:92613400-92617600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr15:92613400-92617600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:92613400-92617600	Weak transcription	NHLF	lung
24	chr15:92613400-92617800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr15:92613400-92618000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr15:92613400-92618000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:92613400-92621000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:92613600-92615000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:92613600-92615000	Enhancers	GM12878-XiMat	blood
30	chr15:92613600-92615200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:92613600-92615200	Enhancers	Adipose Nuclei	Adipose
32	chr15:92613600-92615400	Enhancers	Primary hematopoietic stem cells	blood
33	chr15:92613600-92615400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:92613600-92615400	Enhancers	Brain Angular Gyrus	brain
35	chr15:92613600-92615400	Enhancers	Brain Anterior Caudate	brain
36	chr15:92613600-92615800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:92613600-92616200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr15:92613600-92616400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr15:92613600-92617400	Weak transcription	Osteobl	bone
40	chr15:92613600-92617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr15:92613600-92617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:92613600-92617600	Weak transcription	A549	lung
43	chr15:92613600-92617600	Weak transcription	HMEC	breast
44	chr15:92613600-92617600	Weak transcription	HUVEC	blood vessel
45	chr15:92613600-92620000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:92613800-92614800	Weak transcription	Stomach Mucosa	stomach
48	chr15:92613800-92615400	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr15:92613800-92615800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:92613800-92617400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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