Variant report

Variant	rs8039834
Chromosome Location	chr15:92581849-92581850
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11074038	0.83[EUR][1000 genomes]
rs11074040	0.81[EUR][1000 genomes]
rs1158683	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12050741	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12440470	0.83[EUR][1000 genomes]
rs12708590	0.83[EUR][1000 genomes]
rs1400786	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1543166	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1543167	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1568211	0.82[EUR][1000 genomes]
rs4340310	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4374150	0.83[EUR][1000 genomes]
rs4499213	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4530111	0.83[EUR][1000 genomes]
rs4644836	0.82[EUR][1000 genomes]
rs4984328	0.81[EUR][1000 genomes]
rs7167618	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7168605	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7171310	0.83[EUR][1000 genomes]
rs7177406	0.83[EUR][1000 genomes]
rs7181950	0.83[EUR][1000 genomes]
rs8030627	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8038377	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8041844	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs908650	0.82[EUR][1000 genomes]
rs908651	0.83[EUR][1000 genomes]
rs908655	0.83[EUR][1000 genomes]
rs992838	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92574200-92585800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:92574800-92585800	Weak transcription	Pancreas	Pancrea
3	chr15:92575600-92584000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:92575800-92584400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92576000-92583800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:92577000-92586600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:92577400-92584400	Weak transcription	Brain Anterior Caudate	brain
8	chr15:92578000-92583800	Weak transcription	Esophagus	oesophagus
9	chr15:92578000-92583800	Weak transcription	Right Atrium	heart
10	chr15:92578000-92584800	Weak transcription	Brain Hippocampus Middle	brain
11	chr15:92578000-92585600	Weak transcription	Spleen	Spleen
12	chr15:92578200-92583800	Weak transcription	Fetal Heart	heart
13	chr15:92579000-92587000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr15:92579200-92583800	Weak transcription	Brain Substantia Nigra	brain
15	chr15:92579200-92583800	Weak transcription	Right Ventricle	heart
16	chr15:92579200-92585200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr15:92579400-92584400	Weak transcription	Brain Angular Gyrus	brain
18	chr15:92579400-92585200	Weak transcription	Left Ventricle	heart
19	chr15:92579400-92585200	Weak transcription	Lung	lung
20	chr15:92579400-92591200	Weak transcription	Ovary	ovary
21	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
22	chr15:92581200-92586600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:92581400-92584400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:92581400-92586800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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