Variant report

Variant	rs7167618
Chromosome Location	chr15:92587773-92587774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92584947..92586453-chr15:92587413..92590025,2	K562	blood:
2	chr15:92495196..92498509-chr15:92585959..92588143,4	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11074038	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11074040	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1158683	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12050741	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12440470	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12591961	0.81[ASN][1000 genomes]
rs12708590	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1400786	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543166	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1543167	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1568211	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2135853	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4340310	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4374150	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4499213	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4530111	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4644836	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4984328	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4984329	0.81[ASN][1000 genomes]
rs6496890	0.85[ASN][1000 genomes]
rs7168605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171310	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7177406	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7181950	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8030627	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8038377	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8039834	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8041844	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs908650	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs908651	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs908655	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs992838	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92579400-92591200	Weak transcription	Ovary	ovary
2	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
3	chr15:92583800-92588200	Enhancers	Right Atrium	heart
4	chr15:92584000-92588000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:92584600-92592600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:92585200-92588200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:92585200-92588200	Enhancers	Left Ventricle	heart
8	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
9	chr15:92585600-92591400	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:92585800-92587800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:92585800-92588200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:92585800-92592600	Weak transcription	Brain Anterior Caudate	brain
13	chr15:92586000-92588000	Enhancers	NHEK	skin
14	chr15:92586000-92591000	Weak transcription	Brain Angular Gyrus	brain
15	chr15:92586000-92593200	Weak transcription	Gastric	stomach
16	chr15:92586200-92587800	Enhancers	HMEC	breast
17	chr15:92586200-92588200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:92586200-92591200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:92586400-92591000	Weak transcription	Brain Substantia Nigra	brain
20	chr15:92586600-92588000	Enhancers	Primary hematopoietic stem cells	blood
21	chr15:92586600-92588200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr15:92586600-92588200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr15:92586800-92588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:92586800-92592200	Weak transcription	Spleen	Spleen
25	chr15:92587000-92588200	Enhancers	Esophagus	oesophagus
26	chr15:92587200-92588000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:92587200-92588000	Enhancers	Right Ventricle	heart
28	chr15:92587200-92588200	Enhancers	Fetal Thymus	thymus
29	chr15:92587200-92589000	Weak transcription	Fetal Heart	heart
30	chr15:92587400-92587800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:92587400-92591000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:92587400-92592400	Weak transcription	Lung	lung
33	chr15:92587600-92588200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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