Variant report

Variant	rs4984329
Chromosome Location	chr15:92621174-92621175
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92518566..92519642-chr15:92620200..92621254,3	MCF-7	breast:
2	chr15:92398412..92399161-chr15:92620330..92621178,2	MCF-7	breast:
3	chr15:92392604..92393548-chr15:92620316..92621247,3	MCF-7	breast:
4	chr15:92392988..92393519-chr15:92621100..92621897,2	MCF-7	breast:
5	chr15:92395627..92396664-chr15:92620274..92621236,6	MCF-7	breast:
6	chr15:92399350..92399861-chr15:92620433..92621256,2	MCF-7	breast:
7	chr15:92396982..92397825-chr15:92620655..92621226,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11074038	0.92[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11074040	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1158683	0.83[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs12050741	0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12440470	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12591961	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708590	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1400786	0.85[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs1568211	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2135853	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4247079	0.92[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];0.92[TSI][hapmap];0.84[ASN][1000 genomes]
rs4340310	0.83[CHB][hapmap];0.86[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.80[ASN][1000 genomes]
rs4374150	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4530111	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4644836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4984328	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6496890	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7167618	0.81[ASN][1000 genomes]
rs7168605	0.81[ASN][1000 genomes]
rs7171310	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7177406	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7181950	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8030627	0.85[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap]
rs8041844	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs908650	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs908651	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs908655	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs992838	0.92[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:92614200-92621200	Enhancers	Brain Hippocampus Middle	brain
3	chr15:92614600-92626600	Weak transcription	Psoas Muscle	Psoas
4	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:92616600-92622800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:92616800-92621600	Enhancers	Right Ventricle	heart
7	chr15:92617000-92621200	Enhancers	Brain Cingulate Gyrus	brain
8	chr15:92617400-92621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:92617800-92622800	Weak transcription	Brain Anterior Caudate	brain
10	chr15:92618000-92622000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr15:92618800-92625200	Weak transcription	Ovary	ovary
12	chr15:92619000-92625000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:92619200-92621400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr15:92619200-92630400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:92619200-92638000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr15:92619400-92625200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr15:92619400-92638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:92619600-92623200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:92619600-92625000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:92619800-92621400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr15:92619800-92638000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:92620200-92621200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr15:92620200-92621800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr15:92620400-92621200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:92620400-92625000	Weak transcription	Brain Substantia Nigra	brain
26	chr15:92620600-92621200	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:92620600-92621200	Enhancers	Brain Angular Gyrus	brain
28	chr15:92620600-92621400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr15:92620600-92625200	Weak transcription	Adipose Nuclei	Adipose
30	chr15:92620800-92624800	Weak transcription	Fetal Brain Female	brain
31	chr15:92620800-92625200	Weak transcription	Right Atrium	heart
32	chr15:92620800-92625200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:92620800-92635600	Weak transcription	Spleen	Spleen
34	chr15:92621000-92621200	Enhancers	Stomach Smooth Muscle	stomach
35	chr15:92621000-92623000	Weak transcription	Fetal Heart	heart
36	chr15:92621000-92624800	Weak transcription	Fetal Brain Male	brain
37	chr15:92621000-92625000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:92621000-92625000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:92621000-92625200	Weak transcription	Left Ventricle	heart
40	chr15:92621000-92625600	Weak transcription	Liver	Liver
41	chr15:92621000-92638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:92621000-92638000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:92621000-92639200	Weak transcription	Lung	lung

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