Variant report

Variant	rs11074040
Chromosome Location	chr15:92616941-92616942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11074038	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1158683	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12050741	0.85[EUR][1000 genomes]
rs12440470	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591961	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12708590	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1400786	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1543166	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1543167	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1568211	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2135853	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4247079	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4340310	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4374150	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4499213	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4530111	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4644836	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4984328	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4984329	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6496890	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7167618	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7168605	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7171310	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7177406	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7181950	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8030627	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8039834	0.81[EUR][1000 genomes]
rs8041844	0.81[EUR][1000 genomes]
rs908650	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs908651	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs908655	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs992838	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92610800-92620400	Enhancers	Brain Substantia Nigra	brain
2	chr15:92612800-92617400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:92613000-92617600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:92613000-92617800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:92613000-92620600	Weak transcription	Pancreas	Pancrea
6	chr15:92613200-92617600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:92613400-92617600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr15:92613400-92617600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:92613400-92617600	Weak transcription	NHLF	lung
10	chr15:92613400-92617800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr15:92613400-92618000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:92613400-92618000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:92613400-92621000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:92613600-92617400	Weak transcription	Osteobl	bone
15	chr15:92613600-92617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr15:92613600-92617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:92613600-92617600	Weak transcription	A549	lung
18	chr15:92613600-92617600	Weak transcription	HMEC	breast
19	chr15:92613600-92617600	Weak transcription	HUVEC	blood vessel
20	chr15:92613600-92620000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:92613800-92617400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:92613800-92617600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:92613800-92617600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:92614200-92621000	Enhancers	Fetal Heart	heart
26	chr15:92614200-92621200	Enhancers	Brain Hippocampus Middle	brain
27	chr15:92614400-92617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:92614400-92621000	Enhancers	Lung	lung
29	chr15:92614600-92617400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:92614600-92617400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:92614600-92617400	Weak transcription	NHEK	skin
32	chr15:92614600-92617600	Weak transcription	Duodenum Mucosa	Duodenum
33	chr15:92614600-92617600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:92614600-92617800	Weak transcription	Liver	Liver
35	chr15:92614600-92626600	Weak transcription	Psoas Muscle	Psoas
36	chr15:92615000-92617400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:92615000-92617600	Weak transcription	Spleen	Spleen
38	chr15:92615000-92617600	Weak transcription	GM12878-XiMat	blood
39	chr15:92615000-92618000	Weak transcription	Fetal Thymus	thymus
40	chr15:92615000-92619400	Weak transcription	Fetal Brain Male	brain
41	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr15:92615200-92617400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:92615200-92617600	Weak transcription	Adipose Nuclei	Adipose
44	chr15:92615200-92618200	Weak transcription	Esophagus	oesophagus
45	chr15:92615200-92619200	Weak transcription	Fetal Brain Female	brain
46	chr15:92615400-92617600	Weak transcription	Brain Angular Gyrus	brain
47	chr15:92615400-92617600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:92615400-92617600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr15:92615400-92617800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr15:92615800-92618200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links