Variant report

Variant	rs1543167
Chromosome Location	chr15:92587108-92587109
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92495196..92498509-chr15:92585959..92588143,4	MCF-7	breast:
2	chr15:92578004..92579721-chr15:92585811..92587645,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11074038	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11074040	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1158683	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050741	0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12440470	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12708590	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1400786	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1543166	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568211	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2135853	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4340310	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4374150	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4499213	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4530111	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4644836	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4984328	0.81[ASN][1000 genomes]
rs6496890	0.82[ASN][1000 genomes]
rs7167618	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7168605	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7171310	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7177406	0.82[ASN][1000 genomes]
rs7181950	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8030627	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8038377	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8039834	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8041844	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs908650	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs908651	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs908655	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs992838	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92579400-92591200	Weak transcription	Ovary	ovary
2	chr15:92581000-92593400	Weak transcription	Aorta	Aorta
3	chr15:92583800-92587200	Enhancers	Fetal Heart	heart
4	chr15:92583800-92587400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr15:92583800-92588200	Enhancers	Right Atrium	heart
6	chr15:92584000-92588000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:92584400-92587200	Weak transcription	Right Ventricle	heart
8	chr15:92584600-92587400	Weak transcription	Psoas Muscle	Psoas
9	chr15:92584600-92592600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:92585200-92587400	Enhancers	Lung	lung
11	chr15:92585200-92588200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr15:92585200-92588200	Enhancers	Left Ventricle	heart
13	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
14	chr15:92585600-92587600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:92585600-92591400	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:92585800-92587800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:92585800-92588200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:92585800-92592600	Weak transcription	Brain Anterior Caudate	brain
19	chr15:92586000-92587200	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr15:92586000-92588000	Enhancers	NHEK	skin
21	chr15:92586000-92591000	Weak transcription	Brain Angular Gyrus	brain
22	chr15:92586000-92593200	Weak transcription	Gastric	stomach
23	chr15:92586200-92587200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:92586200-92587400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:92586200-92587800	Enhancers	HMEC	breast
26	chr15:92586200-92588200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:92586200-92591200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:92586400-92591000	Weak transcription	Brain Substantia Nigra	brain
29	chr15:92586600-92588000	Enhancers	Primary hematopoietic stem cells	blood
30	chr15:92586600-92588200	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr15:92586600-92588200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr15:92586800-92587200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:92586800-92588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr15:92586800-92592200	Weak transcription	Spleen	Spleen
35	chr15:92587000-92587600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr15:92587000-92588200	Enhancers	Esophagus	oesophagus

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