Variant report

Variant	rs2135853
Chromosome Location	chr15:92595717-92595718
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11074038	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11074040	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1158683	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12050741	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12440470	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591961	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12708590	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917267	0.80[ASN][1000 genomes]
rs1400786	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1543166	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1543167	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1568211	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4247079	0.86[ASN][1000 genomes]
rs4340310	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4374150	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4499213	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4530111	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4644836	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4984328	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4984329	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6496890	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167618	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7168605	0.85[ASN][1000 genomes]
rs7171310	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7177406	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7181950	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8030627	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8041844	0.81[ASN][1000 genomes]
rs908650	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908651	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908655	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs992838	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2757614	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2760056	chr15:92581551-92615246	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1049753	chr15:92587172-92600399	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv9948	chr15:92588543-92606763	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92585400-92601200	Weak transcription	Fetal Brain Male	brain
2	chr15:92591000-92595800	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr15:92591000-92595800	Enhancers	Brain Substantia Nigra	brain
4	chr15:92591000-92595800	Enhancers	Right Atrium	heart
5	chr15:92591200-92595800	Enhancers	Brain Cingulate Gyrus	brain
6	chr15:92591200-92610800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:92591600-92600200	Weak transcription	Ovary	ovary
8	chr15:92593200-92612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:92593800-92596400	Weak transcription	Aorta	Aorta
10	chr15:92593800-92602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:92594200-92602200	Weak transcription	Spleen	Spleen
12	chr15:92594200-92610800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr15:92594600-92597000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:92594600-92597000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:92594600-92601600	Weak transcription	Esophagus	oesophagus
16	chr15:92594800-92595800	Enhancers	HSMMtube	muscle
17	chr15:92595400-92599800	Weak transcription	Lung	lung
18	chr15:92595400-92599800	Weak transcription	Right Ventricle	heart
19	chr15:92595600-92596600	Weak transcription	Brain Angular Gyrus	brain
20	chr15:92595600-92596800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:92595600-92597200	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:92595600-92600000	Weak transcription	Fetal Heart	heart
23	chr15:92595600-92600000	Weak transcription	Left Ventricle	heart

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