Variant report

Variant	rs12919603
Chromosome Location	chr16:64770560-64770561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr16:64770421-64770645	HepG2	liver:	n/a	chr16:64770533-64770544 chr16:64770532-64770543 chr16:64770528-64770544 chr16:64770528-64770543 chr16:64770531-64770545 chr16:64770533-64770544
2	MAFK	chr16:64770466-64770615	HepG2	liver:	n/a	chr16:64770533-64770544 chr16:64770532-64770543 chr16:64770528-64770544 chr16:64770528-64770543 chr16:64770531-64770545 chr16:64770533-64770544
3	MAFF	chr16:64770458-64770647	HepG2	liver:	n/a	chr16:64770527-64770545

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDH5-5	chr16:64770321-64770707	ENSG00000259859.1

Variant related genes	Relation type
ENSG00000260187	TF binding region
ENSG00000260068	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11859763	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11862881	0.88[ASN][1000 genomes]
rs12446839	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12597618	0.90[ASN][1000 genomes]
rs1423987	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1423988	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1423997	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs179522	0.96[ASN][1000 genomes]
rs2107370	0.83[ASN][1000 genomes]
rs231034	0.95[ASN][1000 genomes]
rs231035	0.95[ASN][1000 genomes]
rs231037	0.95[ASN][1000 genomes]
rs231076	0.93[ASN][1000 genomes]
rs231078	0.93[ASN][1000 genomes]
rs231089	0.89[ASN][1000 genomes]
rs231091	0.89[ASN][1000 genomes]
rs231097	0.90[ASN][1000 genomes]
rs231104	0.90[ASN][1000 genomes]
rs231106	0.89[ASN][1000 genomes]
rs231111	0.90[ASN][1000 genomes]
rs2320127	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4967867	0.84[ASN][1000 genomes]
rs55840743	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6498959	0.87[ASN][1000 genomes]
rs6498961	0.81[ASN][1000 genomes]
rs7185558	0.91[ASN][1000 genomes]
rs7190938	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7192050	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7200356	0.87[ASN][1000 genomes]
rs7200661	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7206276	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv984341	chr16:64770082-64771386	Weak transcription Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64767600-64772200	Weak transcription	Muscle Satellite Cultured Cells	--

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