Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11859763	0.86[ASN][1000 genomes]
rs12446839	0.99[ASN][1000 genomes]
rs12597618	0.99[ASN][1000 genomes]
rs12919603	0.89[ASN][1000 genomes]
rs1423987	0.84[ASN][1000 genomes]
rs1423988	0.85[ASN][1000 genomes]
rs1423997	0.99[ASN][1000 genomes]
rs179522	0.86[ASN][1000 genomes]
rs231034	0.86[ASN][1000 genomes]
rs231035	0.86[ASN][1000 genomes]
rs231037	0.86[ASN][1000 genomes]
rs231076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs231078	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs231089	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs231097	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs231104	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs231106	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs231111	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs231121	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2320127	0.94[ASN][1000 genomes]
rs55840743	0.99[ASN][1000 genomes]
rs6498961	0.83[ASN][1000 genomes]
rs7185558	0.93[ASN][1000 genomes]
rs7190938	0.94[ASN][1000 genomes]
rs7192050	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7200356	0.89[ASN][1000 genomes]
rs7200661	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs231091	CDH16	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64778400-64783000	Enhancers	Fetal Stomach	stomach
2	chr16:64778600-64780200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr16:64778800-64780200	Enhancers	Rectal Smooth Muscle	rectum
4	chr16:64778800-64780600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr16:64779000-64780400	Enhancers	Stomach Smooth Muscle	stomach
6	chr16:64779000-64780600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr16:64779000-64781200	Enhancers	Fetal Lung	lung
8	chr16:64779400-64780200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr16:64779800-64781600	Enhancers	Fetal Kidney	kidney

Quick Search: