Variant report

Variant	rs1292738
Chromosome Location	chr21:16106485-16106486
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1011867	0.85[JPT][hapmap]
rs1292746	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1292747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13050255	0.86[CHB][hapmap]
rs2822873	0.86[CHB][hapmap]
rs2822874	0.86[CHB][hapmap]
rs2822875	0.86[CHB][hapmap]
rs2822877	0.86[CHB][hapmap]
rs2822878	0.86[CHB][hapmap]
rs2822883	0.86[CHB][hapmap]
rs2822884	0.86[CHB][hapmap]
rs2822886	0.86[CHB][hapmap]
rs8132570	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16105000-16107800	Weak transcription	Dnd41	blood
2	chr21:16106000-16107000	Enhancers	K562	blood
3	chr21:16106000-16107000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr21:16106000-16109600	Enhancers	GM12878-XiMat	blood
5	chr21:16106200-16107000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:16106200-16107000	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr21:16106200-16107200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr21:16106200-16107400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr21:16106400-16107000	Enhancers	Primary B cells from peripheral blood	blood
10	chr21:16106400-16107000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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