Variant report

Variant	rs2822884
Chromosome Location	chr21:16116012-16116013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1011868	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1011869	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11700788	0.94[ASN][1000 genomes]
rs11701060	0.94[ASN][1000 genomes]
rs11701668	0.94[ASN][1000 genomes]
rs11701709	0.87[ASN][1000 genomes]
rs11701752	0.89[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.80[MKK][hapmap];0.94[ASN][1000 genomes]
rs11701758	0.94[ASN][1000 genomes]
rs11702307	0.93[ASN][1000 genomes]
rs1292738	0.86[CHB][hapmap]
rs1292747	0.86[CHB][hapmap]
rs1292751	0.97[ASN][1000 genomes]
rs13046554	0.94[ASN][1000 genomes]
rs13049142	0.89[CEU][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap]
rs13049928	0.94[ASN][1000 genomes]
rs13050255	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.94[ASN][1000 genomes]
rs2007558	0.93[ASN][1000 genomes]
rs2246699	0.85[CHB][hapmap]
rs2403804	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446696	0.86[CHB][hapmap];0.91[ASN][1000 genomes]
rs2822873	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.80[MKK][hapmap];0.94[ASN][1000 genomes]
rs2822874	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.80[MKK][hapmap];0.94[ASN][1000 genomes]
rs2822875	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.80[MKK][hapmap];0.94[ASN][1000 genomes]
rs2822876	0.94[ASN][1000 genomes]
rs2822877	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2822878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822883	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.89[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822885	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822886	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822888	0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs2822889	0.95[LWK][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes]
rs2822890	0.95[LWK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs34595740	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs460240	0.92[CHB][hapmap];0.90[CHD][hapmap];0.87[ASN][1000 genomes]
rs460246	0.85[ASN][1000 genomes]
rs467364	0.87[ASN][1000 genomes]
rs62218099	0.94[ASN][1000 genomes]
rs62218100	0.93[ASN][1000 genomes]
rs62218101	0.94[ASN][1000 genomes]
rs7280249	0.93[ASN][1000 genomes]
rs7280684	0.93[ASN][1000 genomes]
rs7281408	0.93[ASN][1000 genomes]
rs7281420	0.93[ASN][1000 genomes]
rs8130742	0.87[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8132570	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9983243	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2822884	SAMSN1	cis	cerebellum	SCAN
rs2822884	EVC	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16115800-16116800	Weak transcription	K562	blood

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