Variant report

Variant	rs2822890
Chromosome Location	chr21:16121475-16121476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13049142	1.00[CHD][hapmap]
rs1380446	0.86[JPT][hapmap]
rs1882870	0.86[JPT][hapmap]
rs2403804	0.86[AFR][1000 genomes]
rs2822878	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs2822883	0.90[LWK][hapmap];0.87[MKK][hapmap]
rs2822884	0.95[LWK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs2822885	0.90[AFR][1000 genomes]
rs2822886	0.95[YRI][hapmap];0.94[AFR][1000 genomes]
rs2822888	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2822889	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822898	0.86[JPT][hapmap]
rs34595740	0.81[AFR][1000 genomes]
rs8128481	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8130742	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs8132820	0.82[GIH][hapmap];0.86[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2822890	HSPA13	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16118600-16124000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr21:16120800-16122600	Transcr. at gene 5' and 3'	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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