Variant report

Variant	rs1882870
Chromosome Location	chr21:16126639-16126640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr21:16123418-16127931	K562	blood:	n/a	n/a
2	KAP1	chr21:16126242-16126780	K562	blood:	n/a	n/a
3	SMARCA4	chr21:16126094-16127011	K562	blood:	n/a	n/a
4	TEAD4	chr21:16125908-16126715	K562	blood:	n/a	n/a
5	EP300	chr21:16123999-16128837	K562	blood:	n/a	chr21:16124804-16124818 chr21:16125052-16125066 chr21:16124948-16124962 chr21:16125293-16125303 chr21:16124761-16124775 chr21:16124954-16124968
6	TBL1XR1	chr21:16124056-16127914	K562	blood:	n/a	n/a
7	POLR2A	chr21:16124304-16127927	K562	blood:	n/a	n/a
8	JUN	chr21:16126043-16126662	K562	blood:	n/a	n/a
9	MYC	chr21:16125647-16126727	K562	blood:	n/a	n/a
10	POLR2A	chr21:16111919-16132315	K562	blood:	n/a	n/a
11	CEBPB	chr21:16126042-16126676	K562	blood:	n/a	n/a
12	RCOR1	chr21:16125595-16126729	K562	blood:	n/a	n/a
13	JUN	chr21:16125992-16126682	K562	blood:	n/a	n/a
14	NR2F2	chr21:16126009-16126708	K562	blood:	n/a	n/a
15	MYC	chr21:16125677-16126854	K562	blood:	n/a	n/a
16	POLR2A	chr21:16125963-16126654	K562	blood:	n/a	n/a
17	CREB1	chr21:16125937-16126764	K562	blood:	n/a	n/a
18	STAT5A	chr21:16125828-16126686	K562	blood:	n/a	n/a
19	POLR2A	chr21:16125402-16126675	K562	blood:	n/a	n/a
20	POLR2A	chr21:16124179-16128571	K562	blood:	n/a	n/a
21	JUND	chr21:16125723-16127802	K562	blood:	n/a	n/a
22	GATA1	chr21:16124276-16127738	PBDE	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
23	TAL1	chr21:16125778-16126786	K562	blood:	n/a	n/a
24	POLR2A	chr21:16125734-16127038	K562	blood:	n/a	n/a
25	GATA1	chr21:16123409-16131660	K562	blood:	n/a	chr21:16124907-16124917 chr21:16124789-16124806 chr21:16124757-16124768 chr21:16125253-16125264 chr21:16124875-16124885
26	CEBPD	chr21:16125947-16126731	K562	blood:	n/a	n/a
27	MAZ	chr21:16125752-16126668	K562	blood:	n/a	n/a
28	PML	chr21:16125898-16126640	K562	blood:	n/a	n/a
29	ARID3A	chr21:16125891-16126806	K562	blood:	n/a	n/a
30	JUN	chr21:16125365-16126721	K562	blood:	n/a	n/a
31	IRF1	chr21:16124018-16128861	K562	blood:	n/a	n/a
32	TEAD4	chr21:16125491-16126815	K562	blood:	n/a	n/a
33	MYC	chr21:16125703-16126675	K562	blood:	n/a	n/a
34	POLR2A	chr21:16124249-16127902	K562	blood:	n/a	n/a
35	POLR2A	chr21:16123269-16128381	K562	blood:	n/a	n/a
36	TRIM28	chr21:16125922-16126663	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr21:16126182..16127786-chr21:16135069..16137449,2	K562	blood:
2	chr21:16125155..16127761-chr21:16129688..16131759,3	K562	blood:
3	chr21:15916860..15919721-chr21:16123639..16127207,4	K562	blood:
4	chr21:15916876..15918776-chr21:16125268..16127207,2	K562	blood:

Variant related genes	Relation type
ENSG00000232884	TF binding region
POLR2CP	TF binding region
ENSG00000155307	Chromatin interaction
ENSG00000226751	Chromatin interaction
ENSG00000228600	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1380446	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1903202	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822889	0.86[JPT][hapmap]
rs2822890	0.86[JPT][hapmap]
rs2822895	0.80[EUR][1000 genomes]
rs2822898	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8128481	0.88[JPT][hapmap]
rs8132820	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16125000-16133000	Weak transcription	Primary B cells from cord blood	blood
2	chr21:16125600-16126800	Flanking Active TSS	K562	blood
3	chr21:16125800-16127000	Enhancers	GM12878-XiMat	blood
4	chr21:16126400-16135200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr21:16126600-16128200	Enhancers	Dnd41	blood

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