Variant report

Variant	rs2822885
Chromosome Location	chr21:16120365-16120366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15916867..15918691-chr21:16117808..16121145,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AF165138.7.1-2	chr21:16120066-16120695	XLOC_014001
2	lnc-AF165138.7.1-2	chr21:16120066-16120695	XLOC_014001
3	lnc-AF165138.7.1-2	chr21:16119083-16120696	ENSG00000232884.3
4	lnc-AF165138.7.1-2	chr21:16120067-16120696	ENSG00000232884.3

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1011868	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1011869	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11700788	0.90[ASN][1000 genomes]
rs11701060	0.90[ASN][1000 genomes]
rs11701668	0.90[ASN][1000 genomes]
rs11701709	0.83[ASN][1000 genomes]
rs11701752	0.90[ASN][1000 genomes]
rs11701758	0.90[ASN][1000 genomes]
rs11702307	0.89[ASN][1000 genomes]
rs1292751	0.99[ASN][1000 genomes]
rs13046554	0.90[ASN][1000 genomes]
rs13049928	0.90[ASN][1000 genomes]
rs13050255	0.90[ASN][1000 genomes]
rs2007558	0.89[ASN][1000 genomes]
rs2403804	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2446696	0.87[ASN][1000 genomes]
rs2822873	0.90[ASN][1000 genomes]
rs2822874	0.90[ASN][1000 genomes]
rs2822875	0.90[ASN][1000 genomes]
rs2822876	0.90[ASN][1000 genomes]
rs2822877	0.90[ASN][1000 genomes]
rs2822878	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822883	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822884	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822886	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2822888	0.90[AFR][1000 genomes]
rs2822889	0.90[AFR][1000 genomes]
rs2822890	0.90[AFR][1000 genomes]
rs34595740	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs460240	0.83[ASN][1000 genomes]
rs460246	0.81[ASN][1000 genomes]
rs467364	0.83[ASN][1000 genomes]
rs62218099	0.90[ASN][1000 genomes]
rs62218100	0.89[ASN][1000 genomes]
rs62218101	0.90[ASN][1000 genomes]
rs7280249	0.88[ASN][1000 genomes]
rs7280684	0.89[ASN][1000 genomes]
rs7281408	0.88[ASN][1000 genomes]
rs7281420	0.88[ASN][1000 genomes]
rs8130742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8132570	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9983243	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16118600-16124000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr21:16118800-16120800	Genic enhancers	K562	blood
3	chr21:16120000-16120600	Weak transcription	Primary B cells from cord blood	blood

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