Variant report

Variant	rs8132570
Chromosome Location	chr21:16099472-16099473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15916330..15918586-chr21:16097161..16099794,2	K562	blood:
2	chr21:16091185..16093425-chr21:16097360..16100309,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1011868	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1011869	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11700788	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11701060	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11701668	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11701709	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11701752	0.81[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11701758	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11702307	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1292738	0.86[CHB][hapmap]
rs1292747	0.86[CHB][hapmap]
rs1292751	0.93[ASN][1000 genomes]
rs13046554	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13049142	0.81[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs13049928	0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13050255	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2007558	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2246699	0.85[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2403804	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2446696	0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2822873	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2822874	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2822875	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2822876	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2822877	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2822878	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822883	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822884	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2822885	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2822886	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34595740	0.96[ASN][1000 genomes]
rs460240	0.92[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];0.91[ASN][1000 genomes]
rs460246	0.90[ASN][1000 genomes]
rs467364	0.91[ASN][1000 genomes]
rs62218099	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62218100	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62218101	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7280249	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7280684	0.97[ASN][1000 genomes]
rs7281408	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7281420	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8130742	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9983243	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16092600-16106000	Weak transcription	K562	blood
2	chr21:16099000-16099600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr21:16099200-16099600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr21:16099200-16099800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr21:16099400-16099800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr21:16099400-16104400	Weak transcription	Dnd41	blood

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