Variant report

Variant	rs12952670
Chromosome Location	chr17:46300404-46300405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46296978..46298715-chr17:46299496..46302023,2	K562	blood:
2	chr17:46299299..46301509-chr17:46325020..46327334,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX11-11	chr17:46299856-46300704	l_1465_chr17:46299137-46300631_prostate

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1002330	0.82[EUR][1000 genomes]
rs11079814	0.83[EUR][1000 genomes]
rs11872095	0.84[EUR][1000 genomes]
rs12150533	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12452956	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12603115	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12603380	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1316657	0.82[EUR][1000 genomes]
rs1377201	0.81[EUR][1000 genomes]
rs1452666	0.81[EUR][1000 genomes]
rs1452667	0.81[EUR][1000 genomes]
rs17620033	0.85[EUR][1000 genomes]
rs17681336	0.82[EUR][1000 genomes]
rs2060876	0.81[EUR][1000 genomes]
rs2072441	0.81[EUR][1000 genomes]
rs2123341	0.83[EUR][1000 genomes]
rs2278868	0.83[EUR][1000 genomes]
rs2305433	0.83[EUR][1000 genomes]
rs2924257	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2938483	0.81[EUR][1000 genomes]
rs3792692	0.82[EUR][1000 genomes]
rs3792694	0.83[EUR][1000 genomes]
rs3805370	0.83[EUR][1000 genomes]
rs3805371	0.83[EUR][1000 genomes]
rs3897986	0.83[EUR][1000 genomes]
rs4793779	0.81[EUR][1000 genomes]
rs4794505	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4794517	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4794525	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55982346	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56161855	0.82[ASN][1000 genomes]
rs62066447	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7210149	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7213876	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7219967	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8069064	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8069263	0.85[EUR][1000 genomes]
rs8071267	0.80[EUR][1000 genomes]
rs8072282	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8075270	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs882380	0.85[EUR][1000 genomes]
rs954226	0.81[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46293800-46301000	Weak transcription	HUVEC	blood vessel
7	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:46295000-46301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:46295000-46304400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:46295200-46303000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:46295800-46303200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46296000-46300600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:46297400-46300600	Weak transcription	A549	lung
15	chr17:46297400-46301600	Weak transcription	GM12878-XiMat	blood
16	chr17:46297400-46302000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:46297400-46302800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr17:46297600-46302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:46297800-46302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:46298000-46306000	Weak transcription	K562	blood
22	chr17:46298600-46302000	Weak transcription	Primary T cells from cord blood	blood
23	chr17:46299400-46302600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:46300400-46302400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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