Variant report

Variant	rs1377201
Chromosome Location	chr17:46312128-46312129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46310757..46313022-chr17:46693144..46694922,2	K562	blood:
2	chr17:46300434..46303354-chr17:46310850..46313600,3	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs1002330	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10445339	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10445377	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10853098	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11079814	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11870056	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11872095	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12150533	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12452956	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12939334	0.84[ASN][1000 genomes]
rs12941830	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12946208	0.84[ASN][1000 genomes]
rs12947089	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12948810	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12952670	0.81[EUR][1000 genomes]
rs1316657	0.88[ASW][hapmap];0.90[MKK][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1349676	1.00[CHB][hapmap]
rs1452666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954268	0.83[ASN][1000 genomes]
rs16954324	0.82[ASN][1000 genomes]
rs17620033	0.88[ASW][hapmap];0.90[MKK][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17681336	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1860862	0.88[ASW][hapmap];0.87[MKK][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1860863	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs188268	1.00[CHB][hapmap]
rs1910574	1.00[CHB][hapmap]
rs1979897	0.82[ASN][1000 genomes]
rs2021752	0.88[ASW][hapmap];0.88[MKK][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2021811	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2041572	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2060876	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs208007	1.00[CHB][hapmap]
rs208013	1.00[CHB][hapmap]
rs208017	1.00[CHB][hapmap]
rs208018	1.00[CHB][hapmap]
rs2109982	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2123341	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2123342	1.00[CHB][hapmap]
rs2278868	0.88[ASW][hapmap];0.88[MKK][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2305433	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2325886	1.00[CHB][hapmap]
rs2924253	1.00[CHB][hapmap]
rs2924255	1.00[CHB][hapmap]
rs2924256	1.00[CHB][hapmap]
rs2924257	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2924258	1.00[CHB][hapmap]
rs2938471	1.00[CHB][hapmap]
rs2938480	1.00[CHB][hapmap]
rs2938482	1.00[CHB][hapmap]
rs2938483	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957932	1.00[CHB][hapmap]
rs2957933	1.00[CHB][hapmap]
rs34949267	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3792692	0.88[ASW][hapmap];0.88[MKK][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3792693	1.00[CHB][hapmap]
rs3792694	0.88[ASW][hapmap];0.88[MKK][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805363	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3805370	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805371	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3897789	0.84[ASN][1000 genomes]
rs3897986	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3944039	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4793779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4794427	1.00[CHB][hapmap]
rs4794505	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4794517	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4794525	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5016303	1.00[CHB][hapmap]
rs55982346	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs595874	1.00[CHB][hapmap]
rs62066447	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6504100	1.00[CHB][hapmap]
rs6504101	1.00[CHB][hapmap]
rs6504108	0.92[ASN][1000 genomes]
rs6504113	1.00[CHB][hapmap]
rs67345313	0.84[ASN][1000 genomes]
rs7208796	1.00[CHB][hapmap]
rs7210149	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7213876	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7219967	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7220619	0.80[ASN][1000 genomes]
rs7220768	0.88[ASW][hapmap];0.88[MKK][hapmap];0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7220922	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7223867	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7225140	1.00[CHB][hapmap]
rs7225435	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7225550	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7225865	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7501770	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs758999	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8066529	1.00[CHB][hapmap]
rs8069064	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8069263	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8071262	1.00[CHB][hapmap]
rs8072282	0.87[ASW][hapmap];0.90[MKK][hapmap];0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8075270	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8077814	1.00[CHB][hapmap]
rs8182234	1.00[CHB][hapmap]
rs882380	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs954226	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs979746	1.00[CHB][hapmap]
rs9889470	0.84[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46301200-46314000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:46302600-46315800	Weak transcription	GM12878-XiMat	blood
9	chr17:46303400-46314200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:46305200-46317600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr17:46306400-46314200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
13	chr17:46307800-46312800	Weak transcription	HUVEC	blood vessel
14	chr17:46309200-46314600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:46310200-46315800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:46310600-46312400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr17:46310600-46312800	Weak transcription	A549	lung
18	chr17:46310600-46314400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr17:46310800-46312600	Weak transcription	Primary T cells from cord blood	blood
20	chr17:46311600-46314400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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