Variant report

Variant	rs2938471
Chromosome Location	chr17:46338750-46338751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46297000..46299844-chr17:46338124..46340489,2	K562	blood:
2	chr17:46337445..46339514-chr17:46686634..46688158,2	MCF-7	breast:
3	chr17:46328583..46331168-chr17:46336391..46339869,3	K562	blood:
4	chr17:46336874..46338866-chr17:46712341..46715282,2	MCF-7	breast:
5	chr17:46338241..46340530-chr17:46665997..46668166,2	K562	blood:
6	chr17:46338519..46339302-chr17:46671017..46671556,2	K562	blood:
7	chr17:46338278..46339846-chr17:46409722..46411626,2	K562	blood:
8	chr17:46328637..46331168-chr17:46337351..46339869,2	K562	blood:
9	chr17:46338702..46340433-chr17:46342377..46345030,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000120075	Chromatin interaction
ENSG00000120093	Chromatin interaction
ENSG00000233101	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1039840	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10853093	1.00[JPT][hapmap]
rs11079815	0.94[ASN][1000 genomes]
rs11079817	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11651669	0.86[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11655781	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11656941	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs12452103	0.94[ASN][1000 genomes]
rs1349676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1377201	1.00[CHB][hapmap]
rs1452661	0.94[ASN][1000 genomes]
rs1452664	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1470831	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16954700	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16954904	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16954931	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16955493	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16956479	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs188268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[ASN][1000 genomes]
rs1910574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2011795	1.00[JPT][hapmap]
rs208006	0.82[ASN][1000 genomes]
rs208007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs208013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs208017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs208018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2123342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2325886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28439030	0.82[ASN][1000 genomes]
rs28482329	0.94[ASN][1000 genomes]
rs2924253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2924255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2924256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2924258	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2938476	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2938480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2938482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2957932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792693	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4488493	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4793822	1.00[JPT][hapmap]
rs4794427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4794467	0.82[ASN][1000 genomes]
rs4794488	1.00[JPT][hapmap]
rs4794561	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4794603	0.86[CEU][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs5016303	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs595874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs6504100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6504101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[ASN][1000 genomes]
rs6504113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7207270	0.82[ASN][1000 genomes]
rs7208796	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7210959	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7213530	0.94[ASN][1000 genomes]
rs7214761	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7215230	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7217741	0.86[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7218167	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7220940	0.94[ASN][1000 genomes]
rs7225140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8066529	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs8067485	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8071262	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8077814	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs8079360	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8079809	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs8080144	0.94[ASN][1000 genomes]
rs8080544	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8081199	0.94[ASN][1000 genomes]
rs8182234	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9303543	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9303544	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs979746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9893405	0.82[ASN][1000 genomes]
rs9899753	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9904487	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9911479	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:46336000-46338800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr17:46336200-46340200	Weak transcription	Fetal Kidney	kidney
12	chr17:46336200-46342400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr17:46336800-46339200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr17:46336800-46339400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr17:46337000-46339200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr17:46337000-46339200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr17:46337000-46339400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr17:46337000-46339600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr17:46337000-46339600	Enhancers	HUVEC	blood vessel
20	chr17:46337000-46343000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:46337200-46341800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr17:46337200-46341800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr17:46337400-46338800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr17:46337600-46338800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr17:46337600-46340200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr17:46337600-46341400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr17:46337800-46338800	Enhancers	Fetal Intestine Small	intestine
28	chr17:46337800-46339000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr17:46338000-46338800	Enhancers	Fetal Intestine Large	intestine
30	chr17:46338000-46339000	Enhancers	H1 Cell Line	embryonic stem cell
31	chr17:46338000-46342400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr17:46338200-46341400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr17:46338400-46339200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr17:46338600-46339000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr17:46338600-46339000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr17:46338600-46339000	Flanking Active TSS	A549	lung
37	chr17:46338600-46339000	Enhancers	K562	blood
38	chr17:46338600-46339200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr17:46338600-46339200	Enhancers	H9 Cell Line	embryonic stem cell
40	chr17:46338600-46339200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:46338600-46339400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr17:46338600-46339800	Strong transcription	Primary T cells from cord blood	blood

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