Variant report

Variant	rs4793822
Chromosome Location	chr17:46489060-46489061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1039840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs11651669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11655781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs11656941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452664	0.88[EUR][1000 genomes]
rs16954700	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs16954904	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs16954931	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs16955493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs16956479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2011795	1.00[JPT][hapmap]
rs28482329	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2924253	1.00[JPT][hapmap]
rs2938471	1.00[JPT][hapmap]
rs2957932	1.00[JPT][hapmap]
rs2957933	1.00[JPT][hapmap]
rs3792695	0.90[ASN][1000 genomes]
rs4488493	0.90[EUR][1000 genomes]
rs4794488	0.90[ASN][1000 genomes]
rs4794561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs4794603	0.88[EUR][1000 genomes]
rs6504113	1.00[JPT][hapmap]
rs7210959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7215230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7217741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs7218167	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs8067485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs8073570	0.83[ASN][1000 genomes]
rs8079360	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8079809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8080144	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8080544	0.88[EUR][1000 genomes]
rs9303543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs9303544	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs979746	1.00[JPT][hapmap]
rs9899753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9904487	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs9911479	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46485000-46491200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr17:46485800-46489800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr17:46486000-46489800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:46486200-46489200	Strong transcription	Fetal Thymus	thymus
5	chr17:46486800-46489800	Genic enhancers	Primary T cells fromperipheralblood	blood
6	chr17:46486800-46503000	Weak transcription	Thymus	Thymus
7	chr17:46487600-46501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:46488400-46491600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:46488600-46489600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr17:46488600-46491200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr17:46488600-46491200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46488800-46489200	Genic enhancers	Primary T cells from cord blood	blood
14	chr17:46488800-46490000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:46488800-46491000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr17:46488800-46494200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:46488800-46494600	Enhancers	Primary B cells from peripheral blood	blood
18	chr17:46488800-46498800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr17:46488800-46499200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr17:46489000-46489200	Genic enhancers	GM12878-XiMat	blood
21	chr17:46489000-46501800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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