Variant report

Variant	rs8073570
Chromosome Location	chr17:46408635-46408636
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46403779..46407902-chr17:46408216..46412684,4	K562	blood:
2	chr17:46401524..46403183-chr17:46407797..46409461,2	K562	blood:
3	chr17:46385991..46388677-chr17:46406157..46408894,2	K562	blood:
4	chr17:46405993..46408762-chr17:46409966..46411975,2	K562	blood:
5	chr17:46407075..46409581-chr17:46412033..46413571,2	K562	blood:
6	chr17:46408330..46410117-chr17:46693519..46696056,2	K562	blood:
7	chr17:46408617..46416311-chr17:46693434..46699776,8	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1039840	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11651669	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11655781	0.85[EUR][1000 genomes]
rs11656941	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1452664	0.85[EUR][1000 genomes]
rs16954700	0.85[EUR][1000 genomes]
rs16954904	0.85[EUR][1000 genomes]
rs16954931	0.85[EUR][1000 genomes]
rs16955493	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28482329	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4488493	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4793822	0.83[ASN][1000 genomes]
rs4794561	0.85[EUR][1000 genomes]
rs4794603	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7210959	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7215230	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7217741	0.85[EUR][1000 genomes]
rs7218167	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8067485	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8079809	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8080544	0.85[EUR][1000 genomes]
rs9303543	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9303544	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9899753	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9904487	0.85[EUR][1000 genomes]
rs9911479	0.85[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46375800-46415800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:46377200-46421000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46390200-46429400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46391000-46410400	Weak transcription	GM12878-XiMat	blood
6	chr17:46391000-46420200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr17:46391200-46421200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr17:46396200-46421200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr17:46396800-46414400	Weak transcription	Primary T cells from cord blood	blood
10	chr17:46406200-46410800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr17:46406200-46411000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:46406200-46413200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:46406400-46421800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr17:46406600-46410400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:46406800-46419600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr17:46407600-46409000	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr17:46407600-46409200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:46407800-46411000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr17:46408000-46421000	Weak transcription	Fetal Thymus	thymus
20	chr17:46408200-46410200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:46408400-46408800	Strong transcription	Thymus	Thymus
22	chr17:46408600-46409800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr17:46408600-46409800	Weak transcription	A549	lung
24	chr17:46408600-46410000	Weak transcription	NHDF-Ad	bronchial
25	chr17:46408600-46415000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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