Variant report

Variant	rs9904487
Chromosome Location	chr17:46370147-46370148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr17:46370015-46370176	SH-SY5Y	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:46369329..46371278-chr17:46687480..46689672,2	K562	blood:
2	chr17:46369748..46372515-chr17:46702166..46704377,2	K562	blood:
3	chr17:46367902..46370246-chr20:53307724..53309375,2	MCF-7	breast:
4	chr17:46361077..46363671-chr17:46367230..46370721,3	K562	blood:

Variant related genes	Relation type
ENSG00000235300	TF binding region
ENSG00000170689	Chromatin interaction
ENSG00000260027	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1039840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079815	0.88[ASN][1000 genomes]
rs11079817	0.88[ASN][1000 genomes]
rs11651669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12452103	0.88[ASN][1000 genomes]
rs1452661	0.88[ASN][1000 genomes]
rs1452664	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470831	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs16954700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs188268	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1910574	0.88[ASN][1000 genomes]
rs2011795	1.00[JPT][hapmap]
rs208007	0.90[YRI][hapmap]
rs208013	0.88[ASN][1000 genomes]
rs208017	0.88[ASN][1000 genomes]
rs208018	1.00[JPT][hapmap]
rs2123342	0.88[ASN][1000 genomes]
rs2325886	0.88[ASN][1000 genomes]
rs28482329	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924253	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2924255	0.88[ASN][1000 genomes]
rs2924256	0.88[ASN][1000 genomes]
rs2924258	0.88[ASN][1000 genomes]
rs2938471	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2938476	0.83[AFR][1000 genomes]
rs2938480	0.88[ASN][1000 genomes]
rs2938482	0.88[ASN][1000 genomes]
rs2957932	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2957933	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4488493	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4793822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs4794488	1.00[CHB][hapmap]
rs4794561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794603	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5016303	0.88[ASN][1000 genomes]
rs595874	0.90[YRI][hapmap]
rs6504100	0.88[ASN][1000 genomes]
rs6504101	0.90[YRI][hapmap];0.88[ASN][1000 genomes]
rs6504113	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7210959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213530	0.88[ASN][1000 genomes]
rs7214761	0.86[AFR][1000 genomes]
rs7215230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220940	0.88[ASN][1000 genomes]
rs7225140	0.88[ASN][1000 genomes]
rs8067485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071262	0.88[ASN][1000 genomes]
rs8073570	0.85[EUR][1000 genomes]
rs8077814	0.88[ASN][1000 genomes]
rs8079360	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079809	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080144	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081199	0.88[ASN][1000 genomes]
rs9303543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303544	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs979746	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9899753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46356600-46370800	Weak transcription	GM12878-XiMat	blood
6	chr17:46357000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46357000-46371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:46357400-46371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr17:46357600-46371400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr17:46358200-46371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:46361400-46371000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:46361600-46371000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46361600-46371800	Weak transcription	Primary T cells from cord blood	blood
14	chr17:46362200-46371000	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:46363200-46370800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr17:46368000-46371600	Weak transcription	HUVEC	blood vessel
17	chr17:46368200-46371000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr17:46370000-46370200	Enhancers	Fetal Intestine Small	intestine
19	chr17:46370000-46370200	Enhancers	A549	lung
20	chr17:46370000-46371000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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