Variant report

Variant	rs1452661
Chromosome Location	chr17:46269348-46269349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46244120..46246169-chr17:46266999..46269436,2	K562	blood:
2	chr17:46263086..46264768-chr17:46269290..46271613,2	K562	blood:
3	chr17:46269238..46271294-chr17:46685390..46688185,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263787	Chromatin interaction
ENSG00000260027	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1039840	0.88[ASN][1000 genomes]
rs11079815	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079817	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651669	0.88[ASN][1000 genomes]
rs11655781	0.88[ASN][1000 genomes]
rs12452103	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12952089	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1349676	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1452664	0.88[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	0.88[ASN][1000 genomes]
rs16954904	0.88[ASN][1000 genomes]
rs16954931	0.88[ASN][1000 genomes]
rs16955493	0.88[ASN][1000 genomes]
rs16956479	0.88[ASN][1000 genomes]
rs188268	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910574	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208006	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208007	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208013	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208017	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123342	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325886	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439030	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28482329	0.88[ASN][1000 genomes]
rs28551638	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2924253	0.84[ASN][1000 genomes]
rs2924255	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924256	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924258	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938471	0.94[ASN][1000 genomes]
rs2938480	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938482	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957932	0.94[ASN][1000 genomes]
rs2957933	0.94[ASN][1000 genomes]
rs3792693	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3792695	0.82[EUR][1000 genomes]
rs4488493	0.88[ASN][1000 genomes]
rs4794426	0.81[EUR][1000 genomes]
rs4794427	0.81[EUR][1000 genomes]
rs4794467	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794561	0.88[ASN][1000 genomes]
rs4794603	0.88[ASN][1000 genomes]
rs5016303	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595874	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6504100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504101	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504113	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207270	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7208796	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7210959	0.88[ASN][1000 genomes]
rs7213530	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215230	0.88[ASN][1000 genomes]
rs7216766	0.83[EUR][1000 genomes]
rs7217741	0.88[ASN][1000 genomes]
rs7218167	0.88[ASN][1000 genomes]
rs7220940	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225140	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066529	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8067485	0.88[ASN][1000 genomes]
rs8071262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077814	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079360	0.88[ASN][1000 genomes]
rs8079809	0.88[ASN][1000 genomes]
rs8080144	0.88[ASN][1000 genomes]
rs8080544	0.88[ASN][1000 genomes]
rs8081199	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303543	0.88[ASN][1000 genomes]
rs9303544	0.82[ASN][1000 genomes]
rs979746	0.94[ASN][1000 genomes]
rs9893405	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899753	0.88[ASN][1000 genomes]
rs9904487	0.88[ASN][1000 genomes]
rs9911479	0.88[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46252000-46271400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr17:46252600-46271000	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr17:46253200-46270800	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr17:46254000-46271000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:46255000-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr17:46255200-46270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:46262800-46269800	Weak transcription	Primary B cells from cord blood	blood
9	chr17:46265600-46271000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:46265800-46276200	Weak transcription	GM12878-XiMat	blood
11	chr17:46266200-46270800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr17:46266800-46270600	Weak transcription	Fetal Thymus	thymus
13	chr17:46266800-46271000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:46266800-46271400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
16	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr17:46267000-46271000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr17:46267400-46271200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr17:46268000-46271400	Strong transcription	Primary T cells from cord blood	blood
20	chr17:46268200-46271000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr17:46268400-46269800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr17:46268400-46270000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr17:46268400-46270000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr17:46268400-46270000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr17:46268400-46271800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr17:46268400-46272400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr17:46268600-46269800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr17:46268600-46270400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr17:46269000-46269400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr17:46269200-46270400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr17:46269200-46271200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr17:46269200-46272000	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links