Variant report

Variant	rs8080144
Chromosome Location	chr17:46487846-46487847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1039840	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079815	0.88[ASN][1000 genomes]
rs11079817	0.88[ASN][1000 genomes]
rs11651669	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655781	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656941	0.88[EUR][1000 genomes]
rs12452103	0.88[ASN][1000 genomes]
rs1452661	0.88[ASN][1000 genomes]
rs1452664	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954904	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954931	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955493	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956479	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910574	0.88[ASN][1000 genomes]
rs208013	0.88[ASN][1000 genomes]
rs208017	0.88[ASN][1000 genomes]
rs2123342	0.88[ASN][1000 genomes]
rs2325886	0.88[ASN][1000 genomes]
rs28482329	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924253	0.84[ASN][1000 genomes]
rs2924255	0.88[ASN][1000 genomes]
rs2924256	0.88[ASN][1000 genomes]
rs2924258	0.88[ASN][1000 genomes]
rs2938471	0.94[ASN][1000 genomes]
rs2938480	0.88[ASN][1000 genomes]
rs2938482	0.88[ASN][1000 genomes]
rs2957932	0.94[ASN][1000 genomes]
rs2957933	0.94[ASN][1000 genomes]
rs4488493	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4793822	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4794561	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794603	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5016303	0.88[ASN][1000 genomes]
rs6504100	0.88[ASN][1000 genomes]
rs6504101	0.88[ASN][1000 genomes]
rs6504113	0.88[ASN][1000 genomes]
rs7210959	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213530	0.88[ASN][1000 genomes]
rs7215230	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217741	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218167	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220940	0.88[ASN][1000 genomes]
rs7225140	0.88[ASN][1000 genomes]
rs8067485	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071262	0.88[ASN][1000 genomes]
rs8077814	0.88[ASN][1000 genomes]
rs8079360	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079809	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080544	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081199	0.88[ASN][1000 genomes]
rs9303543	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303544	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs979746	0.94[ASN][1000 genomes]
rs9899753	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904487	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911479	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46485000-46491200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr17:46485200-46488800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46485400-46488600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:46485400-46488800	Weak transcription	GM12878-XiMat	blood
5	chr17:46485800-46489800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr17:46486000-46488000	Genic enhancers	Primary T cells from cord blood	blood
7	chr17:46486000-46488000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:46486000-46489800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46486200-46488600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr17:46486200-46489200	Strong transcription	Fetal Thymus	thymus
11	chr17:46486400-46488000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
12	chr17:46486600-46488600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr17:46486800-46488800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:46486800-46489000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr17:46486800-46489800	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr17:46486800-46503000	Weak transcription	Thymus	Thymus
17	chr17:46487400-46488000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr17:46487400-46488000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr17:46487400-46488600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr17:46487600-46488400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:46487600-46501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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