Variant report

Variant	rs979746
Chromosome Location	chr17:46336112-46336113
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46334050..46336909-chr17:46339101..46341476,2	K562	blood:
2	chr17:46335792..46337533-chr17:46664070..46666326,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1039840	0.84[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11079815	0.94[ASN][1000 genomes]
rs11079817	0.94[ASN][1000 genomes]
rs11651669	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11655781	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11656941	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs12452103	0.94[ASN][1000 genomes]
rs1349676	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs1377201	1.00[CHB][hapmap]
rs1452661	0.94[ASN][1000 genomes]
rs1452664	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1470831	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16954700	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16954904	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16954931	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16955493	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs16956479	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs188268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[ASN][1000 genomes]
rs1910574	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2011795	1.00[JPT][hapmap]
rs208006	0.82[ASN][1000 genomes]
rs208007	1.00[CHB][hapmap];0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs208013	1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[ASN][1000 genomes]
rs208017	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs208018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2123342	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2325886	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs28439030	0.82[ASN][1000 genomes]
rs28482329	0.94[ASN][1000 genomes]
rs2924253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2924255	1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[ASN][1000 genomes]
rs2924256	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[LWK][hapmap];0.94[ASN][1000 genomes]
rs2924258	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[LWK][hapmap];0.94[ASN][1000 genomes]
rs2938471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938476	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2938480	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2938482	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2957932	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957933	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792693	1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[ASN][1000 genomes]
rs4488493	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4793822	1.00[JPT][hapmap]
rs4794427	1.00[CHB][hapmap];0.89[LWK][hapmap];0.90[YRI][hapmap]
rs4794467	0.82[ASN][1000 genomes]
rs4794561	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4794603	0.86[CEU][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs5016303	1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[ASN][1000 genomes]
rs595874	1.00[CHB][hapmap];0.90[YRI][hapmap];0.82[ASN][1000 genomes]
rs6504100	1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[ASN][1000 genomes]
rs6504101	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[LWK][hapmap];0.90[YRI][hapmap];0.94[ASN][1000 genomes]
rs6504113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7207270	0.82[ASN][1000 genomes]
rs7208796	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[LWK][hapmap];0.82[ASN][1000 genomes]
rs7210959	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7213530	0.94[ASN][1000 genomes]
rs7214761	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7215230	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7217741	0.86[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7218167	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7220940	0.94[ASN][1000 genomes]
rs7225140	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs8066529	1.00[CHB][hapmap];0.87[CHD][hapmap];0.85[LWK][hapmap];0.82[ASN][1000 genomes]
rs8067485	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8071262	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs8077814	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs8079360	0.94[ASN][1000 genomes]
rs8079809	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs8080144	0.94[ASN][1000 genomes]
rs8080544	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8081199	0.94[ASN][1000 genomes]
rs8182234	1.00[CHB][hapmap];0.87[CHD][hapmap];0.89[LWK][hapmap];0.90[YRI][hapmap]
rs9303543	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9303544	1.00[ASW][hapmap];0.86[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9893405	0.82[ASN][1000 genomes]
rs9899753	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9904487	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9911479	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs979746	AARSD1	cis	parietal	SCAN
rs979746	DBF4B	cis	parietal	SCAN
rs979746	GOSR2	cis	parietal	SCAN
rs979746	PRR15L	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:46324800-46337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:46329000-46337000	Weak transcription	HUVEC	blood vessel
12	chr17:46332600-46337000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr17:46332600-46337000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr17:46332600-46337000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr17:46333200-46338600	Enhancers	A549	lung
16	chr17:46333400-46336200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:46335000-46336600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr17:46335200-46337200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr17:46335400-46336400	Enhancers	K562	blood
20	chr17:46335400-46337600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr17:46335600-46337200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr17:46335600-46338200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr17:46335600-46338600	Weak transcription	Primary T cells from cord blood	blood
24	chr17:46335800-46336200	Enhancers	Fetal Kidney	kidney
25	chr17:46335800-46336400	Enhancers	Primary hematopoietic stem cells	blood
26	chr17:46336000-46336200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr17:46336000-46338800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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