Variant report

Variant	rs2325886
Chromosome Location	chr17:46320796-46320797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46319745..46321628-chr17:46703138..46705535,2	K562	blood:
2	chr17:46312728..46315303-chr17:46319981..46321510,2	MCF-7	breast:
3	chr17:46316932..46321831-chr17:46322420..46326261,9	K562	blood:

Variant related genes	Relation type
ENSG00000170689	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1039840	0.88[ASN][1000 genomes]
rs10853093	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs11079815	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079817	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651669	0.88[ASN][1000 genomes]
rs11655781	0.88[ASN][1000 genomes]
rs12452103	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1377201	1.00[CHB][hapmap]
rs1452661	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452664	0.88[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	0.88[ASN][1000 genomes]
rs16954904	0.88[ASN][1000 genomes]
rs16954931	0.88[ASN][1000 genomes]
rs16955493	0.88[ASN][1000 genomes]
rs16956479	0.88[ASN][1000 genomes]
rs188268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208006	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439030	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28482329	0.88[ASN][1000 genomes]
rs28551638	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2924253	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2924255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2938480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957932	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2957933	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3792693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4488493	0.88[ASN][1000 genomes]
rs4794427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4794467	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794488	0.80[CEU][hapmap];1.00[JPT][hapmap]
rs4794561	0.88[ASN][1000 genomes]
rs4794603	0.88[ASN][1000 genomes]
rs5016303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6504100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207270	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7208796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7210959	0.80[YRI][hapmap];0.88[ASN][1000 genomes]
rs7213530	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215230	0.88[ASN][1000 genomes]
rs7217741	0.88[ASN][1000 genomes]
rs7218167	0.88[ASN][1000 genomes]
rs7220940	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8067485	0.88[ASN][1000 genomes]
rs8071262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079360	0.88[ASN][1000 genomes]
rs8079809	0.88[ASN][1000 genomes]
rs8080144	0.88[ASN][1000 genomes]
rs8080544	0.88[ASN][1000 genomes]
rs8081199	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8182234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9303543	0.80[YRI][hapmap];0.88[ASN][1000 genomes]
rs9303544	0.82[ASN][1000 genomes]
rs979746	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9893405	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899753	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9904487	0.88[ASN][1000 genomes]
rs9911479	0.88[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46315800-46323000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr17:46316400-46322800	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr17:46316400-46324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:46317200-46322600	Enhancers	Fetal Intestine Small	intestine
6	chr17:46317200-46324000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:46317400-46322400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr17:46317400-46322800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr17:46317400-46322800	Enhancers	Fetal Intestine Large	intestine
10	chr17:46317800-46323000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:46318800-46321400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:46318800-46321600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr17:46318800-46322400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:46318800-46322600	Enhancers	NHDF-Ad	bronchial
15	chr17:46319000-46321400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr17:46319000-46321400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr17:46319000-46321400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr17:46319000-46321400	Enhancers	A549	lung
19	chr17:46319000-46321400	Enhancers	K562	blood
20	chr17:46319000-46321600	Weak transcription	Hela-S3	cervix
21	chr17:46319000-46322000	Weak transcription	HSMMtube	muscle
22	chr17:46319000-46322600	Enhancers	GM12878-XiMat	blood
23	chr17:46319000-46324800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr17:46319200-46321400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr17:46319400-46321000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr17:46319400-46321400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr17:46319400-46321600	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr17:46319600-46320800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr17:46319600-46321000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr17:46319600-46321000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr17:46319600-46321400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr17:46319600-46321400	Weak transcription	Fetal Lung	lung
33	chr17:46319600-46321400	Weak transcription	HMEC	breast
34	chr17:46319600-46321400	Weak transcription	NH-A	brain
35	chr17:46319600-46321600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr17:46319600-46322800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr17:46319800-46320800	Weak transcription	HSMM	muscle
39	chr17:46319800-46321000	Weak transcription	NHEK	skin
40	chr17:46319800-46321200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr17:46319800-46321200	Weak transcription	Adipose Nuclei	Adipose
42	chr17:46319800-46321200	Weak transcription	NHLF	lung
43	chr17:46319800-46321200	Weak transcription	Osteobl	bone
44	chr17:46319800-46321400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr17:46319800-46321400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr17:46319800-46321400	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr17:46319800-46321400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr17:46319800-46321400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr17:46319800-46321400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:46319800-46321400	Weak transcription	Small Intestine	intestine

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