Variant report

Variant	rs208017
Chromosome Location	chr17:46246703-46246704
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46243746..46245329-chr17:46246193..46248900,2	K562	blood:
2	chr17:46231216..46232855-chr17:46246120..46247924,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1039840	0.88[ASN][1000 genomes]
rs10853093	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs11079815	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651669	0.88[ASN][1000 genomes]
rs11655781	0.88[ASN][1000 genomes]
rs12452103	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1377201	1.00[CHB][hapmap]
rs1452661	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452664	0.88[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	0.88[ASN][1000 genomes]
rs16954904	0.88[ASN][1000 genomes]
rs16954931	0.88[ASN][1000 genomes]
rs16955493	0.88[ASN][1000 genomes]
rs16956479	0.88[ASN][1000 genomes]
rs188268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208006	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439030	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28482329	0.88[ASN][1000 genomes]
rs28551638	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2924253	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2924255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2938480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957932	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs2957933	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3792693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4488493	0.88[ASN][1000 genomes]
rs4794426	0.86[EUR][1000 genomes]
rs4794427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[EUR][1000 genomes]
rs4794467	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794488	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs4794561	0.88[ASN][1000 genomes]
rs4794603	0.88[ASN][1000 genomes]
rs5016303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6504100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207270	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7208796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7210959	0.88[ASN][1000 genomes]
rs7213530	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215230	0.88[ASN][1000 genomes]
rs7216766	0.88[EUR][1000 genomes]
rs7217741	0.88[ASN][1000 genomes]
rs7218167	0.88[ASN][1000 genomes]
rs7220940	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8067485	0.88[ASN][1000 genomes]
rs8071262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079360	0.88[ASN][1000 genomes]
rs8079809	0.88[ASN][1000 genomes]
rs8080144	0.88[ASN][1000 genomes]
rs8080544	0.88[ASN][1000 genomes]
rs8081199	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8182234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9303543	0.88[ASN][1000 genomes]
rs9303544	0.82[ASN][1000 genomes]
rs979746	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs9893405	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899753	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9904487	0.88[ASN][1000 genomes]
rs9911479	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:46220800-46249000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:46236000-46250200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr17:46238200-46250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr17:46240000-46250400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:46240200-46246800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:46241000-46250200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr17:46241000-46253200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr17:46241200-46247400	Weak transcription	Stomach Mucosa	stomach
11	chr17:46244800-46249200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:46245000-46252200	Weak transcription	GM12878-XiMat	blood
13	chr17:46245400-46250800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:46245800-46250600	Strong transcription	Primary T cells from cord blood	blood
15	chr17:46246000-46247800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr17:46246000-46248400	Enhancers	Fetal Brain Male	brain
17	chr17:46246200-46250200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:46246400-46247000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:46246400-46247800	Strong transcription	Fetal Thymus	thymus
20	chr17:46246400-46248000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:46246400-46248400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr17:46246600-46246800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr17:46246600-46247400	Strong transcription	Thymus	Thymus
24	chr17:46246600-46247800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
25	chr17:46246600-46250200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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