Variant report

Variant	rs28551638
Chromosome Location	chr17:46277617-46277618
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11079815	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11079817	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12452103	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12952089	0.81[EUR][1000 genomes]
rs1349676	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1452661	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs188268	0.90[EUR][1000 genomes]
rs1910574	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs208006	0.89[EUR][1000 genomes]
rs208007	0.90[EUR][1000 genomes]
rs208013	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs208017	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2123342	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2325886	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs28439030	0.81[EUR][1000 genomes]
rs2924255	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2924256	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2924258	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2938480	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2938482	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3792693	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4794467	0.86[EUR][1000 genomes]
rs5016303	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs595874	0.90[EUR][1000 genomes]
rs6504100	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6504101	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6504113	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7207270	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7208796	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7213530	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7216766	0.80[EUR][1000 genomes]
rs7220940	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7225140	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8066529	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs8071262	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8077814	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8081199	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9893405	0.86[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
2	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46273200-46293000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:46273600-46287200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:46273800-46278000	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr17:46274000-46290000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:46274200-46283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:46274200-46297200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:46274600-46277800	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:46275000-46282600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:46275200-46287400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:46275400-46286800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:46276000-46281400	Strong transcription	Primary T cells from cord blood	blood
16	chr17:46277400-46280000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:46277400-46281000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:46277400-46287200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links