Variant report

Variant	rs6504113
Chromosome Location	chr17:46305616-46305617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46304702..46306804-chr17:46316986..46319945,3	K562	blood:
2	chr17:46300743..46302488-chr17:46304073..46305915,2	K562	blood:
3	chr17:46304444..46306015-chr17:46686248..46688423,2	K562	blood:
4	chr17:46304803..46307483-chr17:46322659..46325078,2	K562	blood:
5	chr17:46305304..46308204-chr17:46318445..46319954,2	K562	blood:
6	chr17:46303456..46306699-chr17:46306706..46309009,3	K562	blood:

Variant related genes	Relation type
ENSG00000260027	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1039840	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10853093	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs11079815	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651669	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11655781	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11656941	1.00[JPT][hapmap]
rs12452103	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1377201	1.00[CHB][hapmap]
rs1452661	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452664	0.88[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16954904	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16954931	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16955493	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16956479	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs188268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2011795	1.00[JPT][hapmap]
rs208006	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439030	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28482329	0.88[ASN][1000 genomes]
rs28551638	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2924253	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2924255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938471	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2938480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957932	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2957933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs3792693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4488493	0.88[ASN][1000 genomes]
rs4793822	1.00[JPT][hapmap]
rs4794427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4794467	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794488	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4794561	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4794603	0.88[ASN][1000 genomes]
rs5016303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6504100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207270	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7208796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7210959	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7213530	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215230	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7217741	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7218167	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7220940	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8067485	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs8071262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079360	0.88[ASN][1000 genomes]
rs8079809	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs8080144	0.88[ASN][1000 genomes]
rs8080544	0.88[ASN][1000 genomes]
rs8081199	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8182234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9303543	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9303544	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs979746	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9893405	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899753	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9904487	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9911479	1.00[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:46298000-46306000	Weak transcription	K562	blood
9	chr17:46301200-46314000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr17:46302200-46305800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:46302600-46315800	Weak transcription	GM12878-XiMat	blood
12	chr17:46302800-46307200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr17:46302800-46307400	Weak transcription	HUVEC	blood vessel
14	chr17:46303200-46306000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:46303400-46314200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr17:46303600-46306000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr17:46303600-46306200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:46303600-46307600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:46304000-46305800	Enhancers	A549	lung
20	chr17:46304400-46308600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr17:46305200-46317600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr17:46305600-46310800	Strong transcription	Primary T cells from cord blood	blood

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