Variant report

Variant	rs208018
Chromosome Location	chr17:46246469-46246470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1039840	1.00[JPT][hapmap]
rs10853093	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs11079817	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs11651669	1.00[JPT][hapmap]
rs11655781	1.00[JPT][hapmap]
rs11656941	1.00[JPT][hapmap]
rs1349676	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1377201	1.00[CHB][hapmap]
rs16954700	1.00[JPT][hapmap]
rs16954904	1.00[JPT][hapmap]
rs16954931	1.00[JPT][hapmap]
rs16955493	1.00[JPT][hapmap]
rs188268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs1910574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs208007	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs208013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs208017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2123342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2325886	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2924253	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2924255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2924256	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2924258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2938471	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2938480	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2938482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2957932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2957933	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3792693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4794427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4794488	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4794561	1.00[JPT][hapmap]
rs5016303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs595874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs6504100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6504101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs6504113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7208796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7210959	1.00[JPT][hapmap]
rs7215230	1.00[JPT][hapmap]
rs7217741	1.00[JPT][hapmap]
rs7218167	1.00[JPT][hapmap]
rs7225140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8066529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8067485	1.00[JPT][hapmap]
rs8071262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs8077814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs8182234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs9303543	1.00[JPT][hapmap]
rs9303544	1.00[JPT][hapmap]
rs979746	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9899753	1.00[JPT][hapmap]
rs9904487	1.00[JPT][hapmap]
rs9911479	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:46220800-46249000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:46236000-46250200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr17:46238200-46250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46238600-46246600	Weak transcription	Thymus	Thymus
6	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr17:46240000-46246600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr17:46240000-46250400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:46240200-46246800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:46241000-46250200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr17:46241000-46253200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr17:46241200-46247400	Weak transcription	Stomach Mucosa	stomach
13	chr17:46244800-46249200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr17:46245000-46246600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:46245000-46252200	Weak transcription	GM12878-XiMat	blood
16	chr17:46245400-46250800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr17:46245800-46250600	Strong transcription	Primary T cells from cord blood	blood
18	chr17:46246000-46247800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr17:46246000-46248400	Enhancers	Fetal Brain Male	brain
20	chr17:46246200-46246600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr17:46246200-46250200	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr17:46246400-46247000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr17:46246400-46247800	Strong transcription	Fetal Thymus	thymus
24	chr17:46246400-46248000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr17:46246400-46248400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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