Variant report

Variant	rs2924253
Chromosome Location	chr17:46330074-46330075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46317007..46319839-chr17:46328201..46331501,3	K562	blood:
2	chr17:46328637..46331168-chr17:46337351..46339869,2	K562	blood:
3	chr17:46328583..46331168-chr17:46336391..46339869,3	K562	blood:
4	chr17:46326654..46330395-chr17:46331839..46334091,3	MCF-7	breast:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1039840	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs11079815	0.84[ASN][1000 genomes]
rs11079817	0.84[ASN][1000 genomes]
rs11651669	0.85[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs11655781	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs11656941	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs12452103	0.84[ASN][1000 genomes]
rs1349676	1.00[CHB][hapmap]
rs1377201	1.00[CHB][hapmap]
rs1452661	0.84[ASN][1000 genomes]
rs1452664	0.84[ASN][1000 genomes]
rs1470831	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16954700	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16954904	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16954931	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16955493	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs16956479	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs188268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1910574	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2011795	1.00[JPT][hapmap]
rs208007	1.00[CHB][hapmap];0.90[YRI][hapmap]
rs208013	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs208017	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs208018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2123342	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2325886	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs28482329	0.84[ASN][1000 genomes]
rs2924255	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2924256	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2924258	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2938471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2938476	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2938480	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2938482	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2957932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3792693	1.00[CHB][hapmap]
rs4488493	0.84[ASN][1000 genomes]
rs4793822	1.00[JPT][hapmap]
rs4794427	1.00[CHB][hapmap];0.90[YRI][hapmap]
rs4794561	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs4794603	0.85[CEU][hapmap];0.84[ASN][1000 genomes]
rs5016303	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs595874	1.00[CHB][hapmap];0.90[YRI][hapmap]
rs6504100	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6504101	1.00[CHB][hapmap];0.90[YRI][hapmap];0.84[ASN][1000 genomes]
rs6504113	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7208796	1.00[CHB][hapmap]
rs7210959	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs7213530	0.84[ASN][1000 genomes]
rs7214761	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7215230	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs7217741	0.86[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs7218167	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs7220940	0.84[ASN][1000 genomes]
rs7225140	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs8066529	1.00[CHB][hapmap]
rs8067485	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs8071262	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs8077814	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs8079360	0.84[ASN][1000 genomes]
rs8079809	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs8080144	0.84[ASN][1000 genomes]
rs8080544	0.84[ASN][1000 genomes]
rs8081199	0.84[ASN][1000 genomes]
rs8182234	1.00[CHB][hapmap];0.90[YRI][hapmap]
rs9303543	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs9303544	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs979746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9899753	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs9904487	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs9911479	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr17:46323800-46330600	Weak transcription	GM12878-XiMat	blood
8	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:46324800-46337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr17:46326200-46330200	Weak transcription	Primary T cells from cord blood	blood
13	chr17:46326200-46335600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr17:46327000-46330400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr17:46328200-46330600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr17:46328400-46332400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:46328400-46332800	Enhancers	A549	lung
19	chr17:46329000-46337000	Weak transcription	HUVEC	blood vessel
20	chr17:46329200-46332200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:46329600-46331800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr17:46329600-46335400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:46329800-46332000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr17:46329800-46332200	Weak transcription	K562	blood
25	chr17:46330000-46332200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links