Variant report

Variant	rs16956479
Chromosome Location	chr17:46494177-46494178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46489594..46492117-chr17:46492121..46496114,3	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1039840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079815	0.88[ASN][1000 genomes]
rs11079817	0.88[ASN][1000 genomes]
rs11651669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs12452103	0.88[ASN][1000 genomes]
rs1452661	0.88[ASN][1000 genomes]
rs1452664	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954904	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910574	0.88[ASN][1000 genomes]
rs2011795	1.00[JPT][hapmap]
rs208013	0.88[ASN][1000 genomes]
rs208017	0.88[ASN][1000 genomes]
rs2123342	0.88[ASN][1000 genomes]
rs2325886	0.88[ASN][1000 genomes]
rs28482329	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924253	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2924255	0.88[ASN][1000 genomes]
rs2924256	0.88[ASN][1000 genomes]
rs2924258	0.88[ASN][1000 genomes]
rs2938471	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2938480	0.88[ASN][1000 genomes]
rs2938482	0.88[ASN][1000 genomes]
rs2957932	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs2957933	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4488493	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4793822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4794561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4794603	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5016303	0.88[ASN][1000 genomes]
rs6504100	0.88[ASN][1000 genomes]
rs6504101	0.88[ASN][1000 genomes]
rs6504113	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7210959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213530	0.88[ASN][1000 genomes]
rs7215230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220940	0.88[ASN][1000 genomes]
rs7225140	0.88[ASN][1000 genomes]
rs8067485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071262	0.88[ASN][1000 genomes]
rs8077814	0.88[ASN][1000 genomes]
rs8079360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079809	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080144	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080544	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081199	0.88[ASN][1000 genomes]
rs9303543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303544	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs979746	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs9899753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904487	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46486800-46503000	Weak transcription	Thymus	Thymus
2	chr17:46487600-46501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr17:46488800-46494200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:46488800-46494600	Enhancers	Primary B cells from peripheral blood	blood
6	chr17:46488800-46498800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46488800-46499200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr17:46489000-46501800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr17:46489200-46498200	Enhancers	Primary T cells from cord blood	blood
10	chr17:46489200-46502200	Weak transcription	Fetal Thymus	thymus
11	chr17:46489800-46497000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr17:46489800-46505000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr17:46490400-46495600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:46491400-46498000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr17:46491800-46494200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr17:46491800-46494200	Weak transcription	GM12878-XiMat	blood
17	chr17:46492000-46503000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr17:46492200-46494200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr17:46492200-46494200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:46493200-46494200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr17:46493200-46498000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr17:46493400-46497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr17:46493600-46494800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr17:46493800-46494600	Enhancers	H9 Cell Line	embryonic stem cell
25	chr17:46493800-46494800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr17:46493800-46494800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr17:46493800-46495000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr17:46493800-46495200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr17:46494000-46494600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr17:46494000-46494800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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