Variant report

Variant	rs4794603
Chromosome Location	chr17:46385723-46385724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46292856..46293447-chr17:46385046..46385772,2	MCF-7	breast:
2	chr17:46384875..46385781-chr17:46451733..46452437,4	MCF-7	breast:
3	chr17:46385370..46387409-chr17:46687865..46690855,2	K562	blood:
4	chr17:46385150..46385884-chr17:46670857..46671843,4	MCF-7	breast:
5	chr17:46385263..46385818-chr17:46451757..46452701,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX11-2	chr17:46385295-46386124	ENSG00000235300.2

No data

Variant related genes	Relation type
ENSG00000120068	Chromatin interaction
ENSG00000260027	Chromatin interaction
ENSG00000120075	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1039840	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079815	0.88[ASN][1000 genomes]
rs11079817	0.88[ASN][1000 genomes]
rs11651669	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11655781	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656941	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12452103	0.88[ASN][1000 genomes]
rs1452661	0.88[ASN][1000 genomes]
rs1452664	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470831	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs16954700	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954904	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954931	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955493	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956479	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910574	0.88[ASN][1000 genomes]
rs208013	0.88[ASN][1000 genomes]
rs208017	0.88[ASN][1000 genomes]
rs2123342	0.88[ASN][1000 genomes]
rs2325886	0.88[ASN][1000 genomes]
rs28482329	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924253	0.85[CEU][hapmap];0.84[ASN][1000 genomes]
rs2924255	0.88[ASN][1000 genomes]
rs2924256	0.88[ASN][1000 genomes]
rs2924258	0.88[ASN][1000 genomes]
rs2938471	0.86[CEU][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2938476	0.81[AFR][1000 genomes]
rs2938480	0.88[ASN][1000 genomes]
rs2938481	1.00[CHB][hapmap]
rs2938482	0.88[ASN][1000 genomes]
rs2957932	0.86[CEU][hapmap];0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2957933	0.86[CEU][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4488493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4793822	0.88[EUR][1000 genomes]
rs4794561	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5016303	0.88[ASN][1000 genomes]
rs6504100	0.88[ASN][1000 genomes]
rs6504101	0.88[ASN][1000 genomes]
rs6504113	0.88[ASN][1000 genomes]
rs7210959	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7213530	0.88[ASN][1000 genomes]
rs7214761	0.83[AFR][1000 genomes]
rs7215230	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7217741	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218167	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7220940	0.88[ASN][1000 genomes]
rs7225140	0.88[ASN][1000 genomes]
rs8067485	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8071262	0.88[ASN][1000 genomes]
rs8073570	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8077814	0.88[ASN][1000 genomes]
rs8079360	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079809	0.93[CEU][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080144	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080544	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081199	0.88[ASN][1000 genomes]
rs9303543	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303544	0.93[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs979746	0.86[CEU][hapmap];0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9899753	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904487	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911479	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46373600-46388400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:46375800-46396400	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr17:46375800-46415800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr17:46377200-46421000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr17:46378800-46385800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr17:46378800-46389800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:46380200-46387200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr17:46380200-46395400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:46382000-46390200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:46383200-46388800	Weak transcription	Primary T cells from cord blood	blood
12	chr17:46384600-46385800	Enhancers	A549	lung
13	chr17:46384800-46386000	Weak transcription	Fetal Kidney	kidney
14	chr17:46384800-46386200	Enhancers	Liver	Liver
15	chr17:46384800-46387600	Weak transcription	K562	blood
16	chr17:46385000-46390000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:46385200-46387800	Enhancers	GM12878-XiMat	blood
18	chr17:46385400-46386000	Enhancers	Duodenum Mucosa	Duodenum
19	chr17:46385400-46386000	Enhancers	Fetal Intestine Large	intestine
20	chr17:46385400-46386000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr17:46385400-46393400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr17:46385600-46386000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr17:46385600-46386200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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