Variant report

Variant	rs7220940
Chromosome Location	chr17:46299560-46299561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46297000..46299844-chr17:46338124..46340489,2	K562	blood:
2	chr17:46297342..46300258-chr17:46302052..46303891,2	K562	blood:
3	chr17:46296978..46298715-chr17:46299496..46302023,2	K562	blood:
4	chr17:46299299..46301509-chr17:46325020..46327334,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNX11-11	chr17:46299138-46299577	l_1465_chr17:46299137-46300631_prostate

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1039840	0.88[ASN][1000 genomes]
rs11079815	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079817	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651669	0.88[ASN][1000 genomes]
rs11655781	0.88[ASN][1000 genomes]
rs12452103	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12952089	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1349676	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1452661	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452664	0.88[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	0.88[ASN][1000 genomes]
rs16954904	0.88[ASN][1000 genomes]
rs16954931	0.88[ASN][1000 genomes]
rs16955493	0.88[ASN][1000 genomes]
rs16956479	0.88[ASN][1000 genomes]
rs188268	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910574	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208006	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208007	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208013	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208017	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123342	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325886	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439030	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28482329	0.88[ASN][1000 genomes]
rs28551638	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2924253	0.84[ASN][1000 genomes]
rs2924255	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924256	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924258	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938471	0.94[ASN][1000 genomes]
rs2938480	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938482	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957932	0.94[ASN][1000 genomes]
rs2957933	0.94[ASN][1000 genomes]
rs3792693	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4488493	0.88[ASN][1000 genomes]
rs4794467	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794561	0.88[ASN][1000 genomes]
rs4794603	0.88[ASN][1000 genomes]
rs5016303	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595874	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6504100	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504101	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504113	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207270	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7208796	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7210959	0.88[ASN][1000 genomes]
rs7213530	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215230	0.88[ASN][1000 genomes]
rs7217741	0.88[ASN][1000 genomes]
rs7218167	0.88[ASN][1000 genomes]
rs7225140	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066529	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8067485	0.88[ASN][1000 genomes]
rs8071262	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077814	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079360	0.88[ASN][1000 genomes]
rs8079809	0.88[ASN][1000 genomes]
rs8080144	0.88[ASN][1000 genomes]
rs8080544	0.88[ASN][1000 genomes]
rs8081199	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303543	0.88[ASN][1000 genomes]
rs9303544	0.82[ASN][1000 genomes]
rs979746	0.94[ASN][1000 genomes]
rs9893405	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899753	0.88[ASN][1000 genomes]
rs9904487	0.88[ASN][1000 genomes]
rs9911479	0.88[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46293800-46301000	Weak transcription	HUVEC	blood vessel
7	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr17:46295000-46301600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:46295000-46304400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:46295200-46303000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:46295800-46303200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46296000-46300600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:46297400-46300600	Weak transcription	A549	lung
15	chr17:46297400-46301600	Weak transcription	GM12878-XiMat	blood
16	chr17:46297400-46302000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr17:46297400-46302800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr17:46297600-46302200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr17:46297800-46302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:46298000-46306000	Weak transcription	K562	blood
22	chr17:46298600-46302000	Weak transcription	Primary T cells from cord blood	blood
23	chr17:46299400-46299600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr17:46299400-46299600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr17:46299400-46302600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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