Variant report

Variant	rs12452103
Chromosome Location	chr17:46276264-46276265
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr17:46276186-46276440	GM12878	blood:	n/a	chr17:46276361-46276371
2	CREB1	chr17:46276146-46276544	GM12878	blood:	n/a	n/a
3	SPI1	chr17:46276152-46276516	GM12891	blood:	n/a	n/a
4	KAP1	chr17:46276124-46276949	U2OS	brain:	n/a	n/a
5	KAP1	chr17:46276094-46277169	HEK293	kidney:	n/a	n/a
6	SPI1	chr17:46276165-46276453	GM12891	blood:	n/a	n/a

Variant related genes	Relation type
RNU6-1152P	TF binding region

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1039840	0.88[ASN][1000 genomes]
rs11079815	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651669	0.88[ASN][1000 genomes]
rs11655781	0.88[ASN][1000 genomes]
rs12952089	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1349676	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1452661	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452664	0.88[ASN][1000 genomes]
rs1470831	0.84[ASN][1000 genomes]
rs16954700	0.88[ASN][1000 genomes]
rs16954904	0.88[ASN][1000 genomes]
rs16954931	0.88[ASN][1000 genomes]
rs16955493	0.88[ASN][1000 genomes]
rs16956479	0.88[ASN][1000 genomes]
rs188268	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910574	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208006	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208007	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs208013	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs208017	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123342	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325886	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28439030	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28482329	0.88[ASN][1000 genomes]
rs28551638	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2924253	0.84[ASN][1000 genomes]
rs2924255	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924256	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2924258	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938471	0.94[ASN][1000 genomes]
rs2938480	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2938482	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957932	0.94[ASN][1000 genomes]
rs2957933	0.94[ASN][1000 genomes]
rs3792693	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3792695	0.82[EUR][1000 genomes]
rs4488493	0.88[ASN][1000 genomes]
rs4794426	0.81[EUR][1000 genomes]
rs4794427	0.81[EUR][1000 genomes]
rs4794467	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4794561	0.88[ASN][1000 genomes]
rs4794603	0.88[ASN][1000 genomes]
rs5016303	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595874	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6504100	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504101	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504113	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7207270	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7208796	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7210959	0.88[ASN][1000 genomes]
rs7213530	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215230	0.88[ASN][1000 genomes]
rs7216766	0.83[EUR][1000 genomes]
rs7217741	0.88[ASN][1000 genomes]
rs7218167	0.88[ASN][1000 genomes]
rs7220940	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225140	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066529	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8067485	0.88[ASN][1000 genomes]
rs8071262	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8077814	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079360	0.88[ASN][1000 genomes]
rs8079809	0.88[ASN][1000 genomes]
rs8080144	0.88[ASN][1000 genomes]
rs8080544	0.88[ASN][1000 genomes]
rs8081199	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303543	0.88[ASN][1000 genomes]
rs9303544	0.82[ASN][1000 genomes]
rs979746	0.94[ASN][1000 genomes]
rs9893405	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899753	0.88[ASN][1000 genomes]
rs9904487	0.88[ASN][1000 genomes]
rs9911479	0.88[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
3	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:46272200-46277000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr17:46272800-46276400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:46273200-46293000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:46273600-46287200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:46273800-46278000	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr17:46274000-46290000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:46274200-46283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:46274200-46297200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:46274600-46277800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:46275000-46282600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr17:46275200-46287400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:46275400-46286800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:46276000-46276400	Flanking Active TSS	Fetal Intestine Large	intestine
19	chr17:46276000-46277000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr17:46276000-46277000	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr17:46276000-46277000	Flanking Active TSS	A549	lung
22	chr17:46276000-46281400	Strong transcription	Primary T cells from cord blood	blood
23	chr17:46276200-46276400	Enhancers	Adipose Nuclei	Adipose
24	chr17:46276200-46276400	Enhancers	Fetal Kidney	kidney
25	chr17:46276200-46276400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr17:46276200-46276400	Enhancers	Hela-S3	cervix
27	chr17:46276200-46276600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr17:46276200-46276600	Active TSS	Colonic Mucosa	Colon
29	chr17:46276200-46276600	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr17:46276200-46276600	Active TSS	Rectal Smooth Muscle	rectum
31	chr17:46276200-46276800	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr17:46276200-46276800	Enhancers	K562	blood
33	chr17:46276200-46276800	Enhancers	NH-A	brain
34	chr17:46276200-46277000	Enhancers	Stomach Mucosa	stomach
35	chr17:46276200-46277000	Genic enhancers	GM12878-XiMat	blood
36	chr17:46276200-46277200	Enhancers	Liver	Liver
37	chr17:46276200-46277200	Enhancers	HUVEC	blood vessel
38	chr17:46276200-46277400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links