Variant report

Variant	rs2021752
Chromosome Location	chr17:46240263-46240264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr17:46240059-46240609	HepG2	liver:	n/a	n/a
2	FOXA2	chr17:46239974-46240527	HepG2	liver:	n/a	n/a
3	ARID3A	chr17:46239762-46240863	HepG2	liver:	n/a	n/a
4	FOXA2	chr17:46240134-46240644	A549	lung:	n/a	n/a
5	FOXA2	chr17:46240095-46240541	A549	lung:	n/a	n/a
6	MAFK	chr17:46240235-46240531	HepG2	liver:	n/a	n/a
7	SP1	chr17:46240207-46240588	HepG2	liver:	n/a	n/a
8	FOXA1	chr17:46240002-46240582	HepG2	liver:	n/a	n/a
9	MAFF	chr17:46240206-46240504	HepG2	liver:	n/a	n/a
10	FOXA1	chr17:46240068-46240857	HepG2	liver:	n/a	n/a
11	HNF4A	chr17:46240183-46240568	HepG2	liver:	n/a	chr17:46240420-46240432 chr17:46240420-46240432 chr17:46240420-46240432 chr17:46240418-46240433
12	HNF4A	chr17:46240232-46240622	HepG2	liver:	n/a	chr17:46240420-46240432 chr17:46240420-46240432 chr17:46240420-46240432 chr17:46240418-46240433
13	FOSL2	chr17:46240245-46240552	HepG2	liver:	n/a	n/a
14	FOXA1	chr17:46239947-46240556	HepG2	liver:	n/a	n/a
15	FOXA2	chr17:46239623-46240776	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SKAP1	TF binding region

Extended variants
information (count: 135 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1002330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1010228	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1010230	0.80[ASN][1000 genomes]
rs10445339	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10445377	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853098	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079806	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11079808	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11079809	0.80[ASN][1000 genomes]
rs11079814	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11651097	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11870056	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11872095	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12150533	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12452956	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12603115	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12603380	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12936369	0.82[ASN][1000 genomes]
rs12936731	0.92[CHB][hapmap];0.81[JPT][hapmap]
rs12941830	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12947089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12948810	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1316657	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377201	0.88[ASW][hapmap];0.88[MKK][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1452662	0.80[ASN][1000 genomes]
rs1452663	0.84[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs1452665	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs1452666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1452667	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1468270	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs16951519	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs16953927	0.80[ASN][1000 genomes]
rs16953941	0.85[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs16954268	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs16954324	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs17620033	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17681336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1860863	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1860866	0.80[ASN][1000 genomes]
rs1979897	0.85[CHB][hapmap]
rs2021811	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2041572	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2051821	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2060876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2072441	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs208005	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs208008	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs208009	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs208011	0.82[ASN][1000 genomes]
rs208012	0.82[ASN][1000 genomes]
rs208015	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs208019	0.84[ASN][1000 genomes]
rs2109982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2109983	0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs2109984	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2123341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2229369	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2240120	0.85[CHB][hapmap]
rs2240121	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2240122	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2278868	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2305433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2325784	0.83[ASN][1000 genomes]
rs2325804	0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2325885	0.80[ASN][1000 genomes]
rs2924257	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs2938483	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34949267	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34980108	0.80[ASN][1000 genomes]
rs36071506	0.80[ASN][1000 genomes]
rs3744346	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3792692	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792694	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3805370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3805371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3815472	0.84[ASN][1000 genomes]
rs3897986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3944039	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4793779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4794447	1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[ASN][1000 genomes]
rs4794451	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4794505	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4794517	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4794525	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55696440	0.82[ASN][1000 genomes]
rs55982346	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62066407	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62066447	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6504025	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6504108	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs66683298	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67446770	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6847	0.81[JPT][hapmap]
rs71356521	0.82[ASN][1000 genomes]
rs7209730	0.80[ASN][1000 genomes]
rs7210149	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7212202	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7213876	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7217496	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7219967	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7220619	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7220768	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7220922	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222136	0.85[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7223867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224014	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7224461	0.80[ASN][1000 genomes]
rs7225435	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7225550	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7225865	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs741058	0.80[ASN][1000 genomes]
rs7501770	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs758999	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8065670	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8066391	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8069064	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8069263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8071199	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8071879	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs8072282	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8075270	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8077860	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs8079616	0.84[ASN][1000 genomes]
rs875065	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs882380	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs954226	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs978263	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9807087	0.80[ASN][1000 genomes]
rs9899275	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs9899461	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs9903692	0.82[ASN][1000 genomes]
rs9909933	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2021752	SNX11	cis	parietal	SCAN
rs2021752	CDK5RAP3	cis	parietal	SCAN
rs2021752	HOXB2	cis	multi-tissue	Pritchard
rs2021752	AARSD1	cis	parietal	SCAN
rs2021752	PRAC	cis	parietal	SCAN
rs2021752	SNX11	cis	Lymphoblastoid	GTEx
rs2021752	CBX1	cis	cerebellum	SCAN
rs2021752	SNX11	cis	multi-tissue	Pritchard
rs2021752	CDK5RAP3	cis	cerebellum	SCAN
rs2021752	EIF1	cis	cerebellum	SCAN

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46216400-46251400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:46220800-46249000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:46230600-46245000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr17:46231000-46243800	Weak transcription	Primary B cells from cord blood	blood
5	chr17:46234000-46240600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr17:46234400-46240600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:46235600-46240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr17:46236000-46241200	Enhancers	Fetal Intestine Large	intestine
9	chr17:46236000-46250200	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr17:46236200-46244200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:46236400-46240600	Enhancers	Fetal Kidney	kidney
12	chr17:46236400-46241200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:46236400-46241200	Enhancers	Fetal Intestine Small	intestine
14	chr17:46236400-46242600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:46236600-46242600	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr17:46236800-46244200	Strong transcription	Primary T cells from cord blood	blood
17	chr17:46237000-46240400	Enhancers	Duodenum Mucosa	Duodenum
18	chr17:46237000-46241200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr17:46237200-46240800	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr17:46237400-46242000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr17:46238000-46240800	Weak transcription	Gastric	stomach
22	chr17:46238200-46241200	Enhancers	Stomach Mucosa	stomach
23	chr17:46238200-46250800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr17:46238600-46241000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr17:46238600-46241200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr17:46238600-46241600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr17:46238600-46246600	Weak transcription	Thymus	Thymus
28	chr17:46238800-46240600	Active TSS	Liver	Liver
29	chr17:46239200-46240400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr17:46239200-46246400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
32	chr17:46239600-46240400	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr17:46239600-46240800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr17:46239800-46240400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr17:46239800-46240400	Weak transcription	GM12878-XiMat	blood
36	chr17:46239800-46240800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
37	chr17:46239800-46240800	Flanking Active TSS	HepG2	liver
38	chr17:46239800-46241000	Flanking Active TSS	A549	lung
39	chr17:46239800-46241200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr17:46239800-46241200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr17:46239800-46241200	Enhancers	Fetal Brain Male	brain
42	chr17:46240000-46240600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
43	chr17:46240000-46240600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr17:46240000-46242200	Weak transcription	Pancreas	Pancrea
45	chr17:46240000-46246600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr17:46240000-46250400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr17:46240200-46240400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr17:46240200-46240600	Active TSS	NH-A	brain
49	chr17:46240200-46240800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
50	chr17:46240200-46244600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links