Variant report

Variant	rs1452662
Chromosome Location	chr17:46293310-46293311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46292574..46293563-chr17:46384878..46385708,4	MCF-7	breast:
2	chr17:46292856..46293447-chr17:46385046..46385772,2	MCF-7	breast:
3	chr17:46292783..46295645-chr17:46342921..46345128,2	K562	blood:
4	chr17:46286598..46289280-chr17:46291175..46294782,3	K562	blood:
5	chr17:46292744..46293326-chr17:46451926..46452607,2	MCF-7	breast:
6	chr17:46292724..46293589-chr17:46413037..46413890,2	MCF-7	breast:
7	chr17:46292649..46293615-chr17:46326688..46327277,2	K562	blood:
8	chr17:46292934..46293494-chr17:46451651..46452180,2	K562	blood:
9	chr17:46292653..46293618-chr17:46336496..46337643,9	MCF-7	breast:
10	chr17:46292663..46294856-chr17:46339280..46340993,2	MCF-7	breast:
11	chr17:46292707..46293506-chr17:46670895..46671869,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000120075	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs1002330	0.80[ASN][1000 genomes]
rs1010228	0.89[ASN][1000 genomes]
rs1010230	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10445377	0.80[ASN][1000 genomes]
rs10853097	0.81[ASN][1000 genomes]
rs10853098	0.80[ASN][1000 genomes]
rs11079808	0.81[ASN][1000 genomes]
rs11079809	0.89[ASN][1000 genomes]
rs11079814	0.82[ASN][1000 genomes]
rs11872095	0.82[ASN][1000 genomes]
rs12150533	0.84[ASN][1000 genomes]
rs12452956	0.82[ASN][1000 genomes]
rs12600980	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12936369	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12939334	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12941295	0.81[ASN][1000 genomes]
rs12941830	0.80[ASN][1000 genomes]
rs12943543	0.81[ASN][1000 genomes]
rs12946208	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12947089	0.80[ASN][1000 genomes]
rs12950402	0.81[ASN][1000 genomes]
rs1316657	0.80[ASN][1000 genomes]
rs1452663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452665	1.00[ASN][1000 genomes]
rs16953927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16953941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954268	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16954324	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17620033	0.82[ASN][1000 genomes]
rs17681336	0.80[ASN][1000 genomes]
rs17694092	0.80[EUR][1000 genomes]
rs1860866	0.89[ASN][1000 genomes]
rs1979897	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2021752	0.80[ASN][1000 genomes]
rs208005	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs208008	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs208009	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs208011	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs208012	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs208015	0.90[ASN][1000 genomes]
rs208019	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2109983	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2109984	0.81[ASN][1000 genomes]
rs2123341	0.82[ASN][1000 genomes]
rs2278868	0.82[ASN][1000 genomes]
rs2305433	0.82[ASN][1000 genomes]
rs2325784	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2325804	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2325885	1.00[ASN][1000 genomes]
rs34949267	0.80[ASN][1000 genomes]
rs34980108	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35688835	0.81[ASN][1000 genomes]
rs36071506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3744346	0.89[ASN][1000 genomes]
rs3785737	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs3792692	0.80[ASN][1000 genomes]
rs3792694	0.82[ASN][1000 genomes]
rs3805370	0.82[ASN][1000 genomes]
rs3805371	0.82[ASN][1000 genomes]
rs3815472	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3897789	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3897986	0.82[ASN][1000 genomes]
rs4794441	0.81[ASN][1000 genomes]
rs4794448	0.81[ASN][1000 genomes]
rs4794449	0.81[ASN][1000 genomes]
rs4794451	0.81[ASN][1000 genomes]
rs4794453	0.81[ASN][1000 genomes]
rs4794505	0.84[ASN][1000 genomes]
rs4794517	0.84[ASN][1000 genomes]
rs4794525	0.82[ASN][1000 genomes]
rs55696440	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55982346	0.84[ASN][1000 genomes]
rs62064953	0.81[ASN][1000 genomes]
rs62066447	0.84[ASN][1000 genomes]
rs6504031	0.81[ASN][1000 genomes]
rs6504108	0.84[ASN][1000 genomes]
rs67345313	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71356520	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71356521	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7209585	0.81[ASN][1000 genomes]
rs7209730	0.89[ASN][1000 genomes]
rs7210149	0.84[ASN][1000 genomes]
rs7213876	0.82[ASN][1000 genomes]
rs7218700	0.85[ASN][1000 genomes]
rs7219967	0.84[ASN][1000 genomes]
rs7220922	0.80[ASN][1000 genomes]
rs7222136	0.89[ASN][1000 genomes]
rs7223867	0.80[ASN][1000 genomes]
rs7224461	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7225550	0.80[ASN][1000 genomes]
rs72825596	0.80[EUR][1000 genomes]
rs741058	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8065670	0.81[ASN][1000 genomes]
rs8065993	0.81[ASN][1000 genomes]
rs8066049	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs8066391	0.84[ASN][1000 genomes]
rs8069064	0.84[ASN][1000 genomes]
rs8069263	0.84[ASN][1000 genomes]
rs8071199	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8072282	0.84[ASN][1000 genomes]
rs8075270	0.82[ASN][1000 genomes]
rs8076380	0.81[ASN][1000 genomes]
rs8077860	0.81[ASN][1000 genomes]
rs8079616	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8080662	0.81[ASN][1000 genomes]
rs882380	0.84[ASN][1000 genomes]
rs978263	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9807087	0.89[ASN][1000 genomes]
rs9889470	0.91[ASN][1000 genomes]
rs9890691	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9903692	0.98[ASN][1000 genomes]
rs9909933	1.00[ASN][1000 genomes]
rs9910516	0.81[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46298600	Weak transcription	Thymus	Thymus
2	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46274200-46297200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:46280000-46295800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:46286800-46297400	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:46289600-46294600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:46291600-46294200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:46292000-46294600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:46292600-46294000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr17:46292600-46295200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:46292800-46293600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr17:46292800-46293600	Enhancers	K562	blood
17	chr17:46292800-46293800	Enhancers	A549	lung
18	chr17:46292800-46296000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:46292800-46298600	Strong transcription	Primary T cells from cord blood	blood
20	chr17:46293000-46293400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr17:46293000-46293800	Enhancers	HUVEC	blood vessel
22	chr17:46293000-46297200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr17:46293200-46293400	Bivalent Enhancer	NHDF-Ad	bronchial
24	chr17:46293200-46293600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr17:46293200-46293600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr17:46293200-46295000	Strong transcription	GM12878-XiMat	blood
27	chr17:46293200-46297600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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