Variant report

Variant	rs208015
Chromosome Location	chr17:46252346-46252347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46240659..46244208-chr17:46251439..46255142,4	MCF-7	breast:
2	chr17:46228679..46233044-chr17:46249536..46252436,3	K562	blood:
3	chr17:46252245..46255136-chr17:46259026..46261295,2	K562	blood:

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs1010228	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1010230	0.88[ASN][1000 genomes]
rs11079806	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap]
rs11079808	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs11079809	0.88[ASN][1000 genomes]
rs11651097	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs12600980	0.84[ASN][1000 genomes]
rs12936369	0.92[ASN][1000 genomes]
rs12936731	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12939334	0.81[ASN][1000 genomes]
rs12939514	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12941295	0.84[ASN][1000 genomes]
rs12943543	0.84[ASN][1000 genomes]
rs12946208	0.81[ASN][1000 genomes]
rs12947089	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs12950213	0.81[ASN][1000 genomes]
rs12950402	0.84[ASN][1000 genomes]
rs1316657	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1452662	0.90[ASN][1000 genomes]
rs1452663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1452665	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1452666	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1452667	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs1468270	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap]
rs16951519	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.89[TSI][hapmap]
rs16953927	0.90[ASN][1000 genomes]
rs16953941	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.90[ASN][1000 genomes]
rs16954268	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.80[ASN][1000 genomes]
rs16954324	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17620033	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs17694092	0.83[TSI][hapmap]
rs17694404	0.83[TSI][hapmap]
rs1860862	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs1860866	0.88[ASN][1000 genomes]
rs1979897	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs2021752	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2041572	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs2051821	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs2060876	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs208005	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.94[ASN][1000 genomes]
rs208008	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs208009	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.92[ASN][1000 genomes]
rs208011	0.92[ASN][1000 genomes]
rs208012	0.92[ASN][1000 genomes]
rs208019	0.94[ASN][1000 genomes]
rs2109982	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2109983	0.92[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs2109984	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2123341	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2229369	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2240119	0.87[GIH][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap]
rs2240120	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.86[JPT][hapmap];0.89[TSI][hapmap]
rs2240121	1.00[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.89[TSI][hapmap]
rs2240122	1.00[CHB][hapmap];0.86[CHD][hapmap];0.93[JPT][hapmap]
rs2278868	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2305433	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs2325784	0.91[ASN][1000 genomes]
rs2325804	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2325885	0.90[ASN][1000 genomes]
rs34980108	0.90[ASN][1000 genomes]
rs35688835	0.84[ASN][1000 genomes]
rs36071506	0.90[ASN][1000 genomes]
rs3744346	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs3744347	0.80[ASN][1000 genomes]
rs3764400	0.91[MKK][hapmap]
rs3785737	0.81[ASN][1000 genomes]
rs3792692	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs3792694	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs3805370	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs3815472	0.92[ASN][1000 genomes]
rs3897789	0.81[ASN][1000 genomes]
rs3897986	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs4793779	0.83[CHB][hapmap]
rs4794441	0.84[ASN][1000 genomes]
rs4794447	0.83[CHB][hapmap]
rs4794448	0.84[ASN][1000 genomes]
rs4794449	0.84[ASN][1000 genomes]
rs4794451	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs4794453	0.84[ASN][1000 genomes]
rs55696440	0.92[ASN][1000 genomes]
rs62064953	0.83[ASN][1000 genomes]
rs6504025	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6504031	0.84[ASN][1000 genomes]
rs6504032	0.82[ASN][1000 genomes]
rs6504108	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs67345313	0.81[ASN][1000 genomes]
rs6847	0.92[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs71356520	0.86[ASN][1000 genomes]
rs71356521	0.90[ASN][1000 genomes]
rs7209585	0.83[ASN][1000 genomes]
rs7209730	0.88[ASN][1000 genomes]
rs7212202	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7217496	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs7218700	0.84[ASN][1000 genomes]
rs7220520	0.95[CHD][hapmap];0.80[JPT][hapmap];0.80[ASN][1000 genomes]
rs7220768	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs7221441	0.80[ASN][1000 genomes]
rs7222136	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs7223867	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs7224014	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7224461	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs7225550	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs741058	0.88[ASN][1000 genomes]
rs757353	0.87[GIH][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap]
rs758999	0.85[CHB][hapmap];0.80[JPT][hapmap]
rs8065670	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs8065993	0.84[ASN][1000 genomes]
rs8066049	0.82[ASN][1000 genomes]
rs8066391	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs8069263	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs8071199	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.89[TSI][hapmap];0.87[ASN][1000 genomes]
rs8071879	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap]
rs8072282	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs8075500	0.82[ASN][1000 genomes]
rs8076380	0.84[ASN][1000 genomes]
rs8077860	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs8079616	0.92[ASN][1000 genomes]
rs8080662	0.84[ASN][1000 genomes]
rs875065	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs978263	1.00[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs9807087	0.88[ASN][1000 genomes]
rs9889470	0.81[ASN][1000 genomes]
rs9890691	0.84[ASN][1000 genomes]
rs9899275	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs9899461	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[JPT][hapmap]
rs9903692	0.92[ASN][1000 genomes]
rs9909933	0.90[ASN][1000 genomes]
rs9910516	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv908576	chr17:46147807-46260366	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46239200-46253800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46241000-46253200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr17:46247000-46258600	Weak transcription	Primary B cells from cord blood	blood
4	chr17:46247400-46253000	Weak transcription	Thymus	Thymus
5	chr17:46247800-46254400	Weak transcription	Fetal Thymus	thymus
6	chr17:46248000-46253000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:46248200-46253000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:46250000-46253000	Enhancers	HSMM	muscle
9	chr17:46250200-46252600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
10	chr17:46250200-46253000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr17:46250200-46255200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr17:46250400-46252800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr17:46250600-46252400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr17:46251000-46257400	Enhancers	HSMMtube	muscle
15	chr17:46251200-46253600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr17:46251200-46254400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr17:46251200-46267200	Strong transcription	Primary T cells from cord blood	blood
18	chr17:46251200-46277400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:46251800-46252800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr17:46251800-46253200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr17:46251800-46253600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:46251800-46254200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr17:46251800-46256000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr17:46251800-46267400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr17:46252000-46252400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr17:46252000-46271400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr17:46252200-46252800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr17:46252200-46253800	Genic enhancers	GM12878-XiMat	blood
29	chr17:46252200-46254600	Enhancers	Osteobl	bone

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