Variant report

Variant	rs67345313
Chromosome Location	chr17:46302201-46302202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46297342..46300258-chr17:46302052..46303891,2	K562	blood:
2	chr17:46300743..46302488-chr17:46304073..46305915,2	K562	blood:
3	chr17:46301515..46304041-chr17:46368069..46369747,2	K562	blood:
4	chr17:46300434..46303354-chr17:46310850..46313600,3	K562	blood:
5	chr17:46301003..46302784-chr17:46314559..46316930,2	K562	blood:
6	chr17:46300980..46304864-chr17:46703417..46705646,3	K562	blood:

Variant related genes	Relation type
ENSG00000170689	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1010228	0.80[ASN][1000 genomes]
rs1010230	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11079809	0.80[ASN][1000 genomes]
rs12936369	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12939334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12946208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1377201	0.84[ASN][1000 genomes]
rs1452662	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1452663	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1452665	0.91[ASN][1000 genomes]
rs1452666	0.84[ASN][1000 genomes]
rs1452667	0.84[ASN][1000 genomes]
rs16953927	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16953941	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16954268	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16954324	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17620866	0.85[EUR][1000 genomes]
rs17621689	0.85[EUR][1000 genomes]
rs17693878	0.84[EUR][1000 genomes]
rs17694092	0.88[EUR][1000 genomes]
rs17694168	0.85[EUR][1000 genomes]
rs17694404	0.85[EUR][1000 genomes]
rs17694670	0.85[EUR][1000 genomes]
rs17695179	0.80[EUR][1000 genomes]
rs1860866	0.80[ASN][1000 genomes]
rs1979897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2036520	0.85[EUR][1000 genomes]
rs2036521	0.85[EUR][1000 genomes]
rs2060876	0.82[ASN][1000 genomes]
rs208005	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs208008	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs208009	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs208011	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs208012	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs208015	0.81[ASN][1000 genomes]
rs208019	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2109983	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2325784	0.84[ASN][1000 genomes]
rs2325804	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2325885	0.91[ASN][1000 genomes]
rs2938483	0.84[ASN][1000 genomes]
rs34980108	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36071506	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3744346	0.80[ASN][1000 genomes]
rs3815472	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3897789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4793779	0.82[ASN][1000 genomes]
rs55696440	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71356521	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7209730	0.80[ASN][1000 genomes]
rs7222136	0.80[ASN][1000 genomes]
rs7224461	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72825596	0.88[EUR][1000 genomes]
rs72827805	0.85[EUR][1000 genomes]
rs72827806	0.85[EUR][1000 genomes]
rs72827810	0.85[EUR][1000 genomes]
rs741058	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8079616	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs954226	0.82[ASN][1000 genomes]
rs9807087	0.80[ASN][1000 genomes]
rs9889470	1.00[ASN][1000 genomes]
rs9890691	0.81[AFR][1000 genomes]
rs9903692	0.89[ASN][1000 genomes]
rs9909933	0.91[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46266800-46318200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr17:46273200-46302800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr17:46273200-46314000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:46283600-46314000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:46288400-46307000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46294000-46318000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:46295000-46304400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:46295200-46303000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46295800-46303200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr17:46295800-46314200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:46297400-46302800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr17:46297600-46314400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr17:46297800-46302800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:46298000-46306000	Weak transcription	K562	blood
15	chr17:46299400-46302600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr17:46300400-46302400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:46301000-46302800	Enhancers	HUVEC	blood vessel
18	chr17:46301200-46314000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr17:46301600-46302600	Enhancers	GM12878-XiMat	blood
20	chr17:46302000-46302400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr17:46302000-46302600	Enhancers	Primary T cells from cord blood	blood
22	chr17:46302000-46304000	Weak transcription	A549	lung
23	chr17:46302200-46302600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr17:46302200-46303200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr17:46302200-46303800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr17:46302200-46305800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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