Variant report

Variant	rs17693878
Chromosome Location	chr17:46328110-46328111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46326674..46329434-chr17:46702733..46704459,2	K562	blood:
2	chr17:46326654..46330395-chr17:46331839..46334091,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170689	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10514944	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12939334	0.84[EUR][1000 genomes]
rs12946208	0.84[EUR][1000 genomes]
rs16954268	0.84[EUR][1000 genomes]
rs16954324	0.84[EUR][1000 genomes]
rs16955960	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16956001	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17620866	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17621689	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623125	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17623416	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17623518	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694092	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17694168	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17694404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694670	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17695179	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1979897	0.84[EUR][1000 genomes]
rs2036520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2036521	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175156	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2924251	0.82[ASN][1000 genomes]
rs2938475	0.82[ASN][1000 genomes]
rs3897789	0.84[EUR][1000 genomes]
rs4491576	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55641965	0.84[ASN][1000 genomes]
rs55912545	0.84[ASN][1000 genomes]
rs56093336	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56151068	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56302101	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67345313	0.84[EUR][1000 genomes]
rs72825596	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72827805	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72827806	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72827810	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72827825	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72827848	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72827851	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72827854	0.83[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46306600-46335400	Weak transcription	Thymus	Thymus
2	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:46322400-46328200	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr17:46322400-46328200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr17:46322600-46328200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr17:46322600-46328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr17:46322600-46329400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:46323800-46328200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr17:46323800-46330600	Weak transcription	GM12878-XiMat	blood
14	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr17:46324400-46328400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr17:46324800-46328200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr17:46324800-46328200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:46324800-46337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr17:46325000-46328200	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr17:46325000-46328200	Weak transcription	HUVEC	blood vessel
23	chr17:46325600-46328400	Weak transcription	A549	lung
24	chr17:46326000-46329400	Weak transcription	K562	blood
25	chr17:46326200-46330200	Weak transcription	Primary T cells from cord blood	blood
26	chr17:46326200-46335600	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr17:46326400-46329600	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr17:46326600-46328400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr17:46326600-46329600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr17:46327000-46330400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr17:46328000-46329800	Enhancers	HUES48 Cell Line	embryonic stem cell

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