Variant report

Variant	rs17621689
Chromosome Location	chr17:46358952-46358953
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10514944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12939334	0.85[EUR][1000 genomes]
rs12946208	0.85[EUR][1000 genomes]
rs16954268	0.85[EUR][1000 genomes]
rs16954324	0.85[EUR][1000 genomes]
rs16955960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16956001	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16956501	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16957085	1.00[CEU][hapmap];0.89[AFR][1000 genomes]
rs17620866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17623125	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17623518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17693878	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17694168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17694404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17694670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17695179	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979897	0.85[EUR][1000 genomes]
rs2036520	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2036521	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2175156	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2924251	0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2938475	0.84[ASN][1000 genomes]
rs3809744	0.89[AFR][1000 genomes]
rs3897789	0.85[EUR][1000 genomes]
rs4491576	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55641965	0.90[ASN][1000 genomes]
rs55751709	0.89[AFR][1000 genomes]
rs55765969	0.89[AFR][1000 genomes]
rs55912545	0.90[ASN][1000 genomes]
rs56093336	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56151068	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56302101	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56311919	0.89[AFR][1000 genomes]
rs56371910	0.89[AFR][1000 genomes]
rs67345313	0.85[EUR][1000 genomes]
rs72825596	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827805	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827806	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72827810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72827825	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72827848	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72827851	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72827854	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72827869	1.00[AFR][1000 genomes]
rs9899997	1.00[CEU][hapmap]
rs9907565	1.00[CEU][hapmap];0.80[JPT][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:46355800-46359600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:46356400-46362000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr17:46356600-46370000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr17:46356600-46370800	Weak transcription	GM12878-XiMat	blood
10	chr17:46356800-46361000	Weak transcription	Primary T cells from cord blood	blood
11	chr17:46357000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr17:46357000-46371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46357400-46361400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr17:46357400-46371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr17:46357600-46371400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr17:46357800-46361000	Weak transcription	K562	blood
17	chr17:46358200-46371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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