Variant report

Variant	rs16955960
Chromosome Location	chr17:46445993-46445994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:46444552..46447164-chr17:46450394..46452705,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10514944	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16953941	0.89[TSI][hapmap]
rs16954268	0.89[TSI][hapmap]
rs16954324	0.87[AFR][1000 genomes]
rs16956001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956501	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16957085	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes]
rs16957299	1.00[GIH][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];0.87[AFR][1000 genomes]
rs17620866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17621689	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17623125	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17623416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17623518	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17693878	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17694092	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17694168	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17694404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17694670	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17695179	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2036520	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2036521	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2175156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271264	0.82[AMR][1000 genomes]
rs2924251	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs3809744	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4491576	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55641965	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs55751709	1.00[AFR][1000 genomes]
rs55765969	1.00[AFR][1000 genomes]
rs55912545	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56093336	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56151068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56302101	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56311919	1.00[AFR][1000 genomes]
rs56371910	1.00[AFR][1000 genomes]
rs72825596	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827805	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827806	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72827810	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72827825	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72827848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827854	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72827869	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72827897	0.87[AFR][1000 genomes]
rs9899997	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap]
rs9907565	1.00[CEU][hapmap];0.82[JPT][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46414600-46450400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr17:46423400-46451200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr17:46423600-46453800	Weak transcription	Fetal Thymus	thymus
4	chr17:46436200-46450000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr17:46437200-46450600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:46438200-46446200	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr17:46438400-46471800	Weak transcription	Thymus	Thymus
8	chr17:46440000-46449400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:46441000-46451400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:46441800-46446200	Strong transcription	GM12878-XiMat	blood
11	chr17:46442600-46446400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:46442800-46450400	Weak transcription	Primary B cells from cord blood	blood
13	chr17:46444400-46451400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr17:46445200-46451000	Weak transcription	Primary T cells from cord blood	blood
15	chr17:46445400-46446000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:46445400-46446200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
17	chr17:46445600-46446000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr17:46445600-46449400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr17:46445800-46446200	Flanking Active TSS	K562	blood
20	chr17:46445800-46447000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr17:46445800-46450400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:46445800-46451000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr17:46445800-46453000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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